di l3 1-46 all 'DI' IS NOT A RECOGNIZED COMMAND The previous command name entered was not recognized by the system. For a list of commands available to you in the current file, enter "HELP COMMANDS" at an arrow prompt (=>). => display l3 1-46 all L3 ANSWER 1 OF 46 CA COPYRIGHT 1996 ACS AN 124:197662 CA TI Simple force field for study of peptide and protein conformational properties AU Creamer, Trevor P.; ***Rose, George D.*** CS School Medicine, Johns Hopkins University, Baltimore, MD, 21205, USA SO Methods Enzymol. (1995), 259(Energetics of Biological Macromolecules), 576-89 CODEN: MENZAU; ISSN: 0076-6879 DT Journal LA English CC 9-16 (Biochemical Methods) Section cross-reference(s): 6 AB CRASS, a simple force field for use in the study of conformational properties of peptides and proteins, has been derived. ST force field peptide protein conformation IT Conformation and Conformers (simple force field for study of peptide and protein conformational properties) IT Peptides, properties Proteins, properties RL: PRP (Properties) (simple force field for study of peptide and protein conformational properties) L3 ANSWER 2 OF 46 CA COPYRIGHT 1996 ACS AN 124:24288 CA TI Modeling unfolded states of peptides and proteins AU Creamer, Trevor P.; Srinivasan, Rajgopal; ***Rose, George D.*** CS School of Medicine, Johns Hopkins University, Baltimore, MD, 21205, USA SO Biochemistry (1995), 34(50), 16245-50 CODEN: BICHAW; ISSN: 0006-2960 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 9 OS CJACS-IMAGE; CJACS AB The hydrophobic effect is the major factor that drives a protein mol. toward collapse and folding. In this process, residues with apolar side chains assoc. to form a solvent-shielded hydrophobic core. Often, this hydrophobic contribution to folding is quantified by measuring buried apolar surface area, reckoned as the difference in area between hydrophobic groups in the folded protein and in a std. state. Typically, the std. state area of a residue is obtained from tripeptide models, with the results taken to implicitly represent values appropriate for the unfolded state. Here, the authors show that a tripeptide is a poor descriptor of the unfolded state, and its widespread use has prompted erroneous conclusions about folding. As an alternative, the authors explore two limiting models, chosen to bracket the expected behavior of the unfolded chain between reliable extremes. One extreme is represented by simulated hard-sphere peptides and shown to behave like a homopolymer with excluded vol. in a good solvent. The other extreme is represented by fragments excised from folded proteins and conjectured to approx. the time-av. behavior of a thermally denatured protein at Tm, the midpoint of the unfolding transition. Using these models, it is shown that the area buried by apolar side chains upon folding is considerably less than earlier ests. For example, upon transfer from the unfolded state to the middle of an .alpha.-helix, an alanine side chain buries negligible area and, surprisingly, a valine side chain actually gains area. Among other applications, an improved model of the unfolded state can be used to better evaluate the driving force for helix formation in peptides and proteins. ST model peptide protein unfolding IT Conformation and Conformers (folding; modeling unfolded states of peptides and proteins) IT Molecular modeling Simulation and Modeling, physicochemical (modeling unfolded states of peptides and proteins) IT Peptides, properties Proteins, properties RL: PEP (Physical, engineering or chemical process); PRP (Properties); PROC (Process) (modeling unfolded states of peptides and proteins) IT 52-90-4, Cysteine, properties 56-40-6, Glycine, properties 56-41-7, Alanine, properties 56-45-1, Serine, properties 56-84-8, Aspartic acid, properties 56-85-9, Glutamine, properties 56-86-0, Glutamic acid, properties 56-87-1, Lysine, properties 60-18-4, Tyrosine, properties 61-90-5, Leucine, properties 63-68-3, Methionine, properties 63-91-2, (Phenylalanine), properties 70-47-3, Asparagine, properties 71-00-1, (Histidine), properties 72-18-4, Valine, properties 72-19-5, Threonine, properties 73-22-3, Tryptophan, properties 73-32-5, Isoleucine, properties 74-79-3, Arginine, properties 147-85-3, Proline, properties RL: PRP (Properties) (modeling unfolded states of peptides and proteins) L3 ANSWER 3 OF 46 CA COPYRIGHT 1996 ACS AN 123:250588 CA TI Rigid domains in proteins: an algorithmic approach to their identification AU Nichols, William L.; ***Rose, George D.*** ; Eyck, Lynn F. Ten; Zimm, Bruno H. CS Dep. of cheimstry and Biochemistry, Univ. of California, San Diego, CA, 92093, USA SO Proteins: Struct., Funct., Genet. (1995), 23(1), 38-48 CODEN: PSFGEY; ISSN: 0887-3585 DT Journal LA English CC 9-16 (Biochemical Methods) AB A rigid domain, defined here as a tertiary structure common to two or more different protein conformations, can be identified numerically from at. coordinates by finding sets of residues, one in each conformation, such that th distance between any two residues within the set belonging to one conformation is the same as the distance between the two structurally equiv. residues within the set belonging to any other conformation. The distance between two residues is taken to the distance between their resp. .alpha. carbon atoms. With the methods of this paper we have found in the deoxy and oxy conformations of the human Hb .alpha.1.beta.1 dimer a rigid domain closely related to that previously identified by Baldwin and Chothia (J. Mol. Biol. 129: 175-220, 1979). We provide two algorithms, both using the difference-distance matrix, with which to search for rigid domains directly from at. coordinates. The first finds all rigid domains in a protein but has storage and processing demands that become prohibitively large with increasing protein size. The second, although not necessarily finding every rigid domain, is computationally tractable for proteins of any size. Because of its efficiency we are able to search protein conformations recursively for groups of non-intersecting domains. Different protein conformations, when aligned by superimposing their resp. domain structures, can be examd. for structural differences in regions complementing a rigid domain. ST protein conformation rigid domain algorithmic approach IT Conformation and Conformers (an algorithmic approach to their identification of rigid domains in proteins) IT Proteins, properties RL: PRP (Properties) (an algorithmic approach to their identification of rigid domains in proteins) L3 ANSWER 4 OF 46 CA COPYRIGHT 1996 ACS AN 123:78968 CA TI LINUS: A hierarchic procedure to predict the fold of a protein AU Srinivasan, Rajgopal; ***Rose, George D.*** CS Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA SO Proteins: Struct., Funct., Genet. (1995), 22(2), 81-99 CODEN: PSFGEY; ISSN: 0887-3585 DT Journal LA English CC 9-16 (Biochemical Methods) Section cross-reference(s): 6 AB The authors describe LINUS, a hierarchic procedure to predict the fold of a protein from its amino acid sequence alone. The algorithm, which has been implemented in a computer program, was applied to large, overlapping fragments from a diverse test set of 7 x-ray-elucidated proteins, with encouraging results. For all proteins but one, the overall fragment topol. is well predicted, including both secondary and supersecondary structure. The algorithm was also applied to a mol. of unknown conformation, groES, in which x-ray structure detn. is presently ongoing. LINUS is an acronym for Local Independently Nucleated Units of STructure. The procedure ascends the folding hiearchy in discrete stages, with concomitant accretion of structure at each step. The chain is represented by simplified geometry and folds under the influence of a primitive energy function. The only accurately described energetic quantity in this work is hard sphere repulsion-the principal force involved in organizing protein conformation [Richards, F. M. Ann. Rev. Biophys. Bioeng. 6:151-176, 1977]. Among other applications, the method is a natural tool for use in the human genome initiative. ST LINUS hierarchic predict fold protein IT Algorithm Conformation and Conformers Genome Protein sequences (LINUS: A hierarchic procedure to predict the fold of a protein) IT Proteins, properties RL: PRP (Properties) (LINUS: A hierarchic procedure to predict the fold of a protein) L3 ANSWER 5 OF 46 CA COPYRIGHT 1996 ACS AN 123:77560 CA TI Interactions between hydrophobic side chains within .alpha.-helixes AU Creamer, Trevor P.; ***Rose, George D.*** CS Dep. Biophysics Biophysical Chemistry, Johns Hopkins Univ. School Medicine, Baltimore, MD, 21205, USA SO Protein Sci. (1995), 4(7), 1305-14 CODEN: PRCIEI; ISSN: 0961-8368 DT Journal LA English CC 6-3 (General Biochemistry) AB The thermodn. basis of helix stability in peptides and proteins is a topic of considerable interest. Accordingly, the authors computed the interactions between side-chains of all hydrophobic residue pairs and selected triples in a model helix, using Boltzmann-weighted exhaustive modeling. Specifically, all possible pairs from the set, Ala, Cys, His, Ile, Leu, Met, Phe, Trp, Tyr, and Val, were modeled at spacings of (i, i+2), (i, i+3), and (i, i+4) in the central turn of a model polyalanyl .alpha.-helix. Significant interactions, both stabilizing and destabilizing, were found to occur at spacings of (i, i+3) and (i, i+4), particularly in side-chains with rings (i.e., Phe, Tyr, Trp, and His). In addn., modeling of Leu triples in a helix showed that the free energy could exceed the sum of pairwise interactions in certain cases. The calcd. interaction values both rationalized recent exptl. data and provided previously unavailable ests. of the constituent energies and entropies of interaction. ST alpha helix stability peptide protein thermodn IT Peptides, biological studies Proteins, biological studies RL: BPR (Biological process); PRP (Properties); BIOL (Biological study); PROC (Process) (interactions between hydrophobic side-chains within .alpha.-helixes of peptides and proteins) IT Thermodynamics (thermodn. basis of .alpha.-helix stability in proteins and peptides) IT Conformation and Conformers (.alpha.-helical, interactions between hydrophobic side-chains within .alpha.-helixes of peptides and proteins) IT 52-90-4, Cysteine, biological studies 56-41-7, Alanine, biological studies 60-18-4, Tyrosine, biological studies 61-90-5, Leucine, biological studies 63-68-3, Methionine, biological studies 63-91-2, Phenylalanine, biological studies 71-00-1, Histidine, biological studies 72-18-4, Valine, biological studies 73-22-3, Tryptophan, biological studies 73-32-5, Isoleucine, biological studies RL: BPR (Biological process); PRP (Properties); BIOL (Biological study); PROC (Process) (interactions between hydrophobic side-chains within .alpha.-helixes of peptides and proteins) L3 ANSWER 6 OF 46 CA COPYRIGHT 1996 ACS AN 123:5053 CA TI Evaluation of interactions between residues in .alpha.-helices by exhaustive conformational search AU Creamer, Trevor P.; Srinivasan, Rajgopal; ***Rose, George D.*** CS Sch. of Medicine, Washington Univ., St. Louis, MO, 63110, USA SO Tech. Protein Chem. VI, [Pap. Symp. Protein Soc.], 8th (1995), Meeting Date 1994, 443-50. Editor(s): Crabb, John W.. Publisher: Academic, San Diego, Calif. CODEN: 61MDAG DT Conference LA English CC 9-16 (Biochemical Methods) Section cross-reference(s): 6 AB Exhaustive serach techniques can be used to successfully model the interactions and small motifs that are characteristic of protein structure. ST interaction residue alpha helix exhaustive conformation IT Conformation and Conformers Simulation and Modeling, physicochemical (evaluation of interactions between residues in .alpha.-helixes by exhaustive conformational search) IT Proteins, properties RL: PRP (Properties) (evaluation of interactions between residues in .alpha.-helixes by exhaustive conformational search) IT Conformation and Conformers (.alpha.-helical, evaluation of interactions between residues in .alpha.-helixes by exhaustive conformational search) L3 ANSWER 7 OF 46 CA COPYRIGHT 1996 ACS AN 122:308962 CA TI Sequence determinants of the capping box, a stabilizing motif at the N-termini of .alpha.-helixes AU Seale, Jeffrey W.; Srinivasan, Rajgopal; ***Rose, George D.*** CS Dep. Biochem. Mol. Biophys., Washington Univ. Sch. Med., St. Louis, MO, 63110, USA SO Protein Sci. (1994), 3(10), 1741-5 CODEN: PRCIEI; ISSN: 0961-8368 DT Journal LA English CC 6-3 (General Biochemistry) AB The capping box, a recurrent hydrogen bonded motif at the N-termini of .alpha.-helixes, caps 2 of the initial 4 backbone amide hydrogen donors of the helix (Harper ET, Rose GD, 1993, Biochem. 32: 7605-7609). In detail, the side chain of the first helical residue forms a hydrogen bond with the backbone of the fourth helical residue and, reciprocally, the side chain of the fourth residue forms a hydrogen bond with the backbone of the first residue. The authors now enlarge the earlier definition of this motif to include an accompanying hydrophobic interaction between residues that bracket the capping box sequence on either side. The expanded box motif-in which 2 hydrogen bonds and a hydrophobic interaction are localized within 6 consecutive residues - resembles a glycine-based capping motif found at helix C-termini (Aurora R, Srinivasan R, Rose GD, 1994, Science 264:1126-1130). ST protein conformation helix capping box IT Proteins, specific or class RL: BSU (Biological study, unclassified); PEP (Physical, engineering or chemical process); PRP (Properties); BIOL (Biological study); PROC (Process) (capping box-contg.; sequence determinants of capping box - a stabilizing motif at N-termini of .alpha.-helixes) IT Hydrogen bond (sequence determinants of capping box - a stabilizing motif at N-termini of .alpha.-helixes) IT Conformation and Conformers (.alpha.-helical, sequence determinants of capping box - a stabilizing motif at N-termini of .alpha.-helixes) L3 ANSWER 8 OF 46 CA COPYRIGHT 1996 ACS AN 122:74854 CA TI .alpha.-Helix-forming propensities in peptides and proteins AU Creamer, Trevor P.; ***Rose, George D.*** CS Sch. Med., Washington Univ., St. Louis, MO, 63110, USA SO Proteins: Struct., Funct., Genet. (1994), 19(2), 85-97 CODEN: PSFGEY; ISSN: 0887-3585 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 9 AB Much effort has been invested in seeking to understand the thermodn. basis of helix stability in both peptides and proteins. Recently, several groups have measured the helix-forming propensities of individual residues. Using Monte Carlo computer simulations, the authors tested the hypothesis that these differences in measured helix-forming propensity are due primarily to loss of side chain conformational entropy upon helix formation (Creamer, T. P., Rose, G. D. Proc. Natl. Acad. Sci. U.S.A. 89:5937-5941, 1992). The previous study employed a rigid helix backbone, which is here generalized to a completely flexible helix model to ensure that earlier results were not a methodol. artifact. Using this flexible model, side chain rotamer distributions and entropy losses are calcd. and shown to agree with those obtained earlier. The authors note that the side chain conformational entropy calcd. for Trp in the previous study was in error; a cor. value is presented. Extending earlier work, calcd. entropy losses are found to correlate strongly with recent helix propensity scales derived from substitutions made within protein helixes. In contrast, little correlation is found between these helix propensity scales and the accessible surface area buried upon formation of a model polyalanyl .alpha.-helix. Taken in sum, the results indicate that loss of side chain entropy is a major determinant of the helix-forming tendency of residues in both peptide and protein helixes. ST conformation helix protein peptide entropy IT Peptides, biological studies RL: BSU (Biological study, unclassified); PRP (Properties); BIOL (Biological study) (.alpha.-helix-contg.; .alpha.-helix-forming propensities in peptides and proteins) IT Amino acids, biological studies RL: BSU (Biological study, unclassified); PRP (Properties); BIOL (Biological study) (.alpha.-helix-forming propensities in peptides and proteins) IT Simulation and Modeling, biological (Monte Carlo, .alpha.-helix-forming propensities in peptides and proteins) IT Entropy Potential energy and function (conformational, .alpha.-helix-forming propensities in peptides and proteins) IT Conformation and Conformers (.alpha.-helical, .alpha.-helix-forming propensities in peptides and proteins) IT Proteins, specific or class RL: BSU (Biological study, unclassified); PRP (Properties); BIOL (Biological study) (.alpha.-helix-contg., .alpha.-helix-forming propensities in peptides and proteins) IT 56-41-7, Alanine, biological studies 60-18-4, Tyrosine, biological studies 61-90-5, Leucine, biological studies 63-68-3, Methionine, biological studies 63-91-2, Phenylalanine, biological studies 72-18-4, Valine, biological studies 73-22-3, Tryptophan, biological studies 73-32-5, Isoleucine, biological studies 25191-17-7, Poly(alanine) 25213-34-7, Poly(alanine) RL: BSU (Biological study, unclassified); PRP (Properties); BIOL (Biological study) (.alpha.-helix-forming propensities in peptides and proteins) L3 ANSWER 9 OF 46 CA COPYRIGHT 1996 ACS AN 122:26214 CA TI The T-to-R transformation in hemoglobin: a reevaluation AU Srinivasan, Rajgopal; ***Rose, George D.*** CS Dep. Biochem. Mol. Biophys., Washington Univ. Sch. Med., St. Louis, MO, 63110, USA SO Proc. Natl. Acad. Sci. U. S. A. (1994), 91(23), 11113-17 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 6-3 (General Biochemistry) AB The relation between the T, R, and R2 quaternary forms of Hb is examd. by computational expts. Contrary to previous suggestions, the authors propose that the R quaternary form may lie on the pathway from T to R2. This proposal is consistent with four independent observations. (I) Difference distance maps are used to identify those parts of the mol. that undergo conformational change upon oxygenation. The simplest interpretation of these maps brackets R between T and R2. (Ii) Linear interpolation from T to R2 passes through R. (Iii) The well-known "switch" region (so called because, upon transition between the T and R quaternary forms, a residue from the .beta.2 subunit toggles between two stable positions within the .alpha.1 subunit) progresses from T through R to R2, successively. (I.v.) A hitherto-undocumented feature, diagnostic of the R structure, is noted within the .alpha. subunit: upon transformation from T to R, the .beta.-turns at the amino termini of the E and F helixes flip from one turn type to another. Upon transformation from R to R2, the latter turn-a strained conformation-flips back again. ST Hb quaternary structure conformation transition IT Conformation and Conformers Quaternary structure (reevaluation of T-to-R transformation in Hb) IT Hemoglobins RL: BPR (Biological process); BSU (Biological study, unclassified); PRP (Properties); BIOL (Biological study); PROC (Process) (reevaluation of T-to-R transformation in Hb) L3 ANSWER 10 OF 46 CA COPYRIGHT 1996 ACS AN 122:3949 CA TI Molten globular characteristics of the native state of apomyoglobin AU Lin, Laura; Pinker, Rachel J.; Forde, Kirk; ***Rose, George D.*** ; Kallenbach, Neville R. CS Dept. Chemistry, New York Univ., New York, NY, 10003, USA SO Nat. Struct. Biol. (1994), 1(7), 447-52 CODEN: NSBIEW; ISSN: 1072-8368 DT Journal LA English CC 6-3 (General Biochemistry) AB Apomyoglobin (apoMb) is a natural intermediate in biosynthesis of Mb, and has some structural features in common with the heme-contg. native state. Unfolding or refolding studies of apoMb have identified a molten globule intermediate at acid pH. Here, it is shown that both the native state of apoMb and the molten globule intermediate have highly plastic structures. Substitution of single amino acids on the surface or in the interior of helixes in the native protein produce dramatic changes in the helix content and Trp emission of apoMb at neutral and acidic pH. The signals from the intermediate and native apoMb correlate closely suggesting that apoMb itself has a molten globule-like character, its structure representing a population of interconverting substrates rather than a fixed conformation. ST apomyoglobin molten globule conformation IT Conformation and Conformers (molten globule; molten globular characteristics of the native state of apomyoglobin) IT Myoglobins RL: PRP (Properties) (apo-, molten globular characteristics of the native state of apomyoglobin) L3 ANSWER 11 OF 46 CA COPYRIGHT 1996 ACS AN 121:295152 CA TI Protein folding: predicting predicting AU ***Rose, George D.*** ; Creamer, Trevor P. CS Sch. Med., Washington Univ., St. Louis, MO, 63110, USA SO Proteins: Struct., Funct., Genet. (1994), 19(1), 1-3 CODEN: PSFGEY; ISSN: 0887-3585 DT Journal; General Review LA English CC 6-0 (General Biochemistry) AB A review, with 19 refs., discussing the perspectives of protein folding and its prediction. ST review protein folding prediction IT Conformation and Conformers (prediction of protein folding) IT Proteins, properties RL: PRP (Properties) (prediction of protein folding) L3 ANSWER 12 OF 46 CA COPYRIGHT 1996 ACS AN 121:102318 CA TI Rules for .alpha.-helix termination by glycine AU Aurora, Rajeev; Srinivasan, Rajgopal; ***Rose, George D.*** CS Sch. Med., Washington Univ., St. Louis, MO, 63110, USA SO Science (Washington, D. C.) (1994), 264(5162), 1126-30 CODEN: SCIEAS; ISSN: 0036-8075 DT Journal LA English CC 6-3 (General Biochemistry) AB A predictive rule for protein folding is presented that involves two recurrent glycine-based motifs that cap the carboxyl termini of .alpha. helixes. In proteins, helixes that terminated in glycine residues were found predominantly in one of these two motifs. These glycine structures had a characteristic pattern of polar and apolar residues. Visual inspection of known helical sequences was sufficient to distinguish the two motifs from each other and from internal glycines that fail to terminate helixes. These glycine motifs - in which the local sequence selects between available structures - represent an example of a stereochem. rule for protein folding. ST protein helix conformation glycine carboxy terminus IT Proteins, properties RL: PRP (Properties) (.alpha.-helical conformation of, glycine-based capping motifs in carboxy termini of) IT Conformation and Conformers (.alpha.-helical, of proteins, glycine-based capping motifs in carboxy termini of) IT 56-40-6, Glycine, properties RL: PRP (Properties) (protein .alpha.-helical conformations contg. capping motifs based on, in carboxy terminus) L3 ANSWER 13 OF 46 CA COPYRIGHT 1996 ACS AN 119:219951 CA TI Effects of alanine substitutions in .alpha.-helixes of sperm whale myoglobin on protein stability AU Pinker, Rachel J.; Lin, Laura; ***Rose, George D.*** ; Kallenbach, Neville R. CS Dep. Chem., New York Univ., New York, NY, 10003, USA SO Protein Sci. (1993), 2(7), 1099-105 CODEN: PRCIEI; ISSN: 0961-8368 DT Journal LA English CC 6-3 (General Biochemistry) AB The peptide backbones in folded native proteins contain distinctive secondary structures, .alpha.-helixes, .beta.-sheets, and turns, with significant frequency. One question that arises in folding is how the stability of this structure relates to that of the protein as a whole. To address this question, the authors substituted the .alpha.-helix-stabilizing alanine side chain at 16 selected sites in the sequence of sperm whale myoglobin, 12 at helical sites on the surface of the protein, and 4 at obviously internal sites. Substitution of alanine for bulky side chains at internal sites destabilizes the protein, as expected if packing interactions are disrupted. Alanine substitutions do not uniformly stabilize the protein, either in capping positions near the ends of helixes or at mid-helical sites near the surface of myoglobin. When cor. for the extent of exposure of each side chain replaced by alanine at a mid-helix position, alanine replacement still has no clear effect in stabilizing the native structure. Thus linkage between the stabilization of secondary structure and tertiary structure in myoglobin cannot be demonstrated, probably because of the relatively small free energy differences between side chains in stabilizing isolated helix. By contrast, about 80% of the variance in free energy obsd. can be accounted for by the loss in buried surface area of the native residue substituted by alanine. The differential free energy of helix stabilization does not account for any addnl. variation. ST myoglobin helix conformation stability alanine substitution; protein helix folding stability alanine substitution IT Myoglobins RL: BIOL (Biological study) (.alpha.-helical regions of, alanine substitutions in, protein stability response to) IT Proteins, properties RL: PRP (Properties) (.alpha.-helical regions of, alanine substitutions in, stability response to) IT Free energy (conformational, of myoglobin .alpha.-helical regions, alanine substitutions effect on, tertiary structure stability in relation to) IT Conformation and Conformers (tertiary, of proteins, secondary structure role in stability of) IT Conformation and Conformers (.alpha.-helical, of proteins, alanine substitutions in, protein stability response to) IT 56-41-7, Alanine, properties RL: PRP (Properties) (in protein .alpha.-helical regions, tertiary structure stability dependence on) L3 ANSWER 14 OF 46 CA COPYRIGHT 1996 ACS AN 119:133548 CA TI Hydrogen bonding, hydrophobicity, packing, and protein folding AU ***Rose, George D.*** CS Sch. Med., Washington Univ., St. Louis, MO, 63110, USA SO Annu. Rev. Biophys. Biomol. Struct. (1993), 22, 381-415 CODEN: ABBSE4; ISSN: 1056-8700 DT Journal; General Review LA English CC 6-0 (General Biochemistry) AB A review, with 189 refs., of protein folding and stability and the roles of hydrogen bonding, hydrophobicity and internal packing in protein folding. ST review protein conformation folding; hydrogen bond protein conformation folding review; hydrophobicity protein conformation folding review; packing protein conformation folding review IT Proteins, properties RL: PRP (Properties) (conformation of, folding of) IT Hydrogen bond Hydrophobicity (in protein conformational folding, role of) IT Conformation and Conformers (of proteins, folding of) IT 1333-74-0 RL: BIOL (Biological study) (hydrogen bond, in protein conformational folding, role of) IT 7732-18-5 RL: BIOL (Biological study) (hydrophobicity, in protein conformational folding, role of) L3 ANSWER 15 OF 46 CA COPYRIGHT 1996 ACS AN 119:66031 CA TI Helix stop signals in proteins and peptides: The capping box AU Harper, Edwin T.; ***Rose, George D.*** CS Sch. Med., Washington Univ., St. Louis, MO, 63110, USA SO Biochemistry (1993), 32(30), 7605-9 CODEN: BICHAW; ISSN: 0006-2960 DT Journal LA English CC 6-3 (General Biochemistry) OS CJACS-IMAGE; CJACS AB The .alpha.-helix (Pauling, L.; et al., 1951) is a common motif in both proteins and peptides. Despite intense investigation, predictive understanding of helixes is still lacking. A recent hypothesis [Presta, L. G.; Rose, G. D., 1988) proposed that the structural specificity of helixes resides, in part, in those residues that flank helix termini. If so, then signals that arrest helix propagation, i.e., helix stop signals, should be found among these flanking residues. Evidence is presented for the existence of one such signal, a reciprocal backbone-side-chain hydrogen-bonding interaction, dubbed the capping box. In proteins, the capping box is found uniquely at helix N-termini. In peptides, the capping box can function as a helix stop signal. ST helix alpha stop signal peptide protein IT Amino acids, biological studies RL: BIOL (Biological study) (of .alpha.-helix stop signal, of peptides and proteins) IT Peptides, properties RL: PRP (Properties) (.alpha.-helix of, stop signal for, reciprocal backbone-side-chain hydrogen-bonding interaction of capping box as) IT Proteins, properties RL: PRP (Properties) (.alpha.-helix of, stop signal for, reciprocal backbone-side-chain hydrogen-bonding interaction of capping box at helix N-terminus as) IT Conformation and Conformers (.alpha.-helical, of peptides and proteins, stop signal for, reciprocal backbone-side-chain hydrogen-bonding interaction of capping box as) IT 56-45-1, Serine, biological studies 56-84-8, Aspartic acid, biological studies 56-85-9, Glutamine, biological studies 56-86-0, Glutamic acid, biological studies 70-47-3, Asparagine, biological studies 71-00-1, Histidine, biological studies 72-19-5, Threonine, biological studies RL: BIOL (Biological study) (of .alpha.-helix stop signal, of peptides and proteins) L3 ANSWER 16 OF 46 CA COPYRIGHT 1996 ACS AN 118:96564 CA TI Protein folding. What's the question? AU Lattman, Eaton E.; ***Rose, George D.*** CS Sch. Med., Johns Hopkins Univ., Baltimore, MD, 21205, USA SO Proc. Natl. Acad. Sci. U. S. A. (1993), 90(2), 439-41 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 6-3 (General Biochemistry) AB The folding reactions of many small, globular proteins exhibit two-state kinetics, in which the folded and unfolded states interconvert readily without observable intermediates. Typically, the free energy difference, .DELTA.G, between the native and denatured states of such a protein is quite small, lying in the range of approx. -5 to -15 kcal/mol. Under these circumstances, a population of native-like mols. will persist, even in the presence of mutations sufficiently destabilizing to change the sign of .DELTA.G. Therefore, it is not energy per se that dets. conformation. A corollary to this argument is that specificity - not stability - would be the more informative focus in future folding studies. ST protein conformation folding determinant IT Proteins, properties RL: PRP (Properties) (conformation of, determinants of folding in) IT Conformation and Conformers (of proteins, determinants of folding in) IT Free energy (conformational, of proteins, folding determinants in relation to) L3 ANSWER 17 OF 46 CA COPYRIGHT 1996 ACS AN 118:34647 CA TI Hydrogen bonding in globular proteins AU Stickle, Douglas F.; Presta, Leonard G.; Dill, Ken A.; ***Rose, George D.*** CS Coll. Med., Pennsylvania State Univ., Hershey, PA, 17033, USA SO J. Mol. Biol. (1992), 226(4), 1143-59 CODEN: JMOBAK; ISSN: 0022-2836 DT Journal LA English CC 6-3 (General Biochemistry) AB A global census of the hydrogen bonds in 42 x-ray-elucidated proteins was taken and the following demog. trends were identified. Most hydrogen bonds are local, i.e. between partners that are close in sequence, the primary exception being hydrogen-bonded ions pairs. Most hydrogen bonds are between backbone atoms in the protein, an av. of 68%. All proteins studied have extensive hydrogen-bonded secondary structure, an av. of 82%. Almost all backbone hydrogen bonds are within single elements of secondary structure. An approx. rule of thirds applies: slightly more than one-third (37%) form i.fwdarw.i-3 hydrogen bonds, almost one-third (32%) form i.fwdarw.i-4 hydrogen bonds, and slightly less than one-third (26%) reside in paired strands of .beta.-sheet. The remaining 5% are not wholly within an individual helix, turn or sheet. Side-chain to backbone hydrogen bonds are clustered at helix-capping positions. An extensive network of hydrogen bonds is present in helixes. To a close approxn., the total no. of hydrogen bonds is a simple function of a protein's helix and sheet content. A unique quantity, termed the reduced no. of hydrogen bonds, is defined as the max. no. of hydrogen bonds possible when every donor:acceptor pair is constrained to be 1:1. This quantity scales linearly with chain length, with 0.71 reduced hydrogen bond per residue. Implications of these results for pathways of protein folding are discussed. ST protein globular hydrogen bond folding; conformation folding globular protein hydrogen bond IT Hydrogen bond (of globular proteins, quantity and classification and patterns of) IT Conformation and Conformers (of proteins, hydrogen bonding in, protein folding in relation to) IT Proteins, specific or class RL: PEP (Physical, engineering or chemical process); PRP (Properties); PROC (Process) (globular, hydrogen bonding in, protein folding in relation to) IT Conformation and Conformers (secondary, of proteins, hydrogen bonding in, quantity and classification and patterns of) IT 1333-74-0 RL: BIOL (Biological study) (hydrogen bond, of globular proteins, quantity and classification and patterns of) L3 ANSWER 18 OF 46 CA COPYRIGHT 1996 ACS AN 117:126745 CA TI Side-chain entropy opposes .alpha.-helix formation but rationalizes experimentally determined helix-forming propensities AU Creamer, Trevor P.; ***Rose, George D.*** CS Dep. Biochem. Biophys., Univ. North Carolina, Chapel Hill, NC, 27599-7260, USA SO Proc. Natl. Acad. Sci. U. S. A. (1992), 89(13), 5937-41 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 6-3 (General Biochemistry) AB In recent host-guest studies, the helix-forming tendencies of amino acid residues have been quantified. Here, the hypothesis that these measured helix-forming propensities are due primarily to conformational restrictions imposed upon residue side chains by the helix itself are explored. This proposition is tested by calcg. the extent to which the bulky helix backbone freezes out available degrees of freedom in helix side chains. Specifically, for a series of apolar residues, the difference in configurational entropy, .DELTA.S, between each side chain in the unfolded state and in the .alpha.-helical state is obtained from a simple Monte Carlo calcn. These computed entropy differences are then compared with the exptl. detd. values. Measured and calcd. values are found to be in close agreement for naturally occurring amino acids and in total disagreement for non-natural amino acids. In the calcn., .DELTA.SAla = 0. The rank order of entropy loss for the series of natural apolar side chains under consideration is Ala < Leu < Trp < Met < Phe < Ile < Tyr < Val. Among these, none favor helix formation; Ala is neutral, and all remaining residues are unfavorable to varying degrees. Thus, applied to side chains, the term helix preference is a misnomer. While side chain-side chain interactions may modulate stability in some instances, these results indicate that the drive to form helices must originate in the backbone, consistent with Pauling's view of four decades ago (Pauling, L., et al., 1951). ST protein helix conformation side chain entropy IT Amino acids, properties RL: PRP (Properties) (entropy of side-chains of, of proteins, in folded and helical state, helix-forming propensity in relation to) IT Proteins, properties RL: PRP (Properties) (helix formation by, loss of side-chain entropy role in) IT Simulation and Modeling, physicochemical (of amino acid side-chain entropy, protein helix formation effect on) IT Entropy (configurational, of amino acid side-chains in unfolded and helical state, helix-forming propensity in relation to) IT Conformation and Conformers (.alpha.-helical, formation of, in proteins, loss of side-chain entropy role in) IT 56-41-7, Alanine, properties 60-18-4, Tyrosine, properties 61-90-5, Leucine, properties 63-68-3, Methionine, properties 63-91-2, Phenylalanine, properties 72-18-4, Valine, properties 73-22-3, Tryptophan, properties 73-32-5, Isoleucine, properties 80-60-4, .alpha.-Aminobutyric acid 327-57-1, Norleucine 6600-40-4, Norvaline RL: PRP (Properties) (entropy of side-chains of, of protein, in unfolded and helical state) L3 ANSWER 19 OF 46 CA COPYRIGHT 1996 ACS AN 115:44515 CA TI The protein-folding problem: the native fold determines packing, but does packing determine the native fold? AU Behe, Michael J.; Lattman, Eaton E.; ***Rose, George D.*** CS Coll. Med., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Proc. Natl. Acad. Sci. U. S. A. (1991), 88(10), 4195-9 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 6-3 (General Biochemistry) AB A globular protein adopts its native three-dimensional structure spontaneously under physiol. conditions. This structure is specified by a stereochem. code embedded within the amino acid sequence of that protein. Elucidation of this code is a major, unsolved challenge, known as the protein-folding problem. A crit. aspect of the code is thought to involve mol. packing. Globular proteins have high packing densities, a consequence of the fact that residue side chains within the mol. interior fit together with an exquisite complementarity, like pieces of a three-dimensional jigsaw puzzle. Such packing interactions are widely viewed as the principal determinant of the native structure. To test this view, the authors analyzed proteins of known structure for the presence of preferred interactions, reasoning that if side-chain complementarity is an important source of structural specificity, then sets of residues that interact favorably should be apparent. The anal. leads to the surprising conclusion that high packing densities, so characteristic of globular proteins, are readily attainable among clusters of the naturally occurring hydrophobic amino acid residues. It is anticipated that this realization will simplify approaches to the protein-folding problem. ST globular protein folding side chain packing; conformation globular protein folding packing IT Conformation and Conformers (of globular proteins, folding of, hydrophobic side-chain packing in relation to) IT Amino acids, biological studies RL: BIOL (Biological study) (of globular proteins, hydrophobic side-chains of, packing of, protein folding in relation to) IT Proteins, specific or class RL: BIOL (Biological study) (globular, folding of, hydrophobic side chain packing in relation to) L3 ANSWER 20 OF 46 CA COPYRIGHT 1996 ACS AN 114:19620 CA TI Hydrophobicity of amino acid subgroups in proteins AU Lesser, Glenn J.; ***Rose, George D.*** CS Coll. Med., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Proteins: Struct., Funct., Genet. (1990), 8(1), 6-13 CODEN: PSFGEY; ISSN: 0887-3585 DT Journal LA English CC 6-3 (General Biochemistry) AB Protein folding studies often utilize areas and vols. to assess the hydrophobic contribution to conformational free energy (Richards, F.M., 1977). The mean area buried upon folding was calcd. for every chem. group in each residue within a set of x-ray elucidated proteins. These measurements, together with a std. state cavity size for each group, are documented. It is obsd. that, on av., each type of group buries a const. fraction of its std. state area. The mean area buried by most, though not all, groups can be closely approximated by summing contributions from the 3 characteristic parameters corresponding to 3 atom types: (1) C or S, which turn out to be 86% buried, on av.; (2) neutral O or N, which are 40% buried, on av.; and (3) charged O or N, which are 32% buried, on av. ST protein amino acid subgroup hydrophobicity folding IT Surface area (amino acids and subgroups in proteins, hydrophobicity and folding in relation to) IT Amino acids, properties RL: PRP (Properties) (hydrophobicity of subgroups and, in protein folding, solvent-accessible surface area in relation to) IT Hydrophobicity (of amino acids and subgroups in globular proteins, folding dependence on) IT Conformation and Conformers (of globular proteins, folding of, amino acid subgroup hydrophobicity in relation to) IT Proteins, specific or class RL: BIOL (Biological study) (globular, hydrophobicity of amino acid subgroup in, folding in relation to) IT Functional groups (hydrophilic, solvent-accessible area of, in globular proteins, folding in relation to) IT Functional groups (hydrophobic, solvent-accessible area of, in globular proteins, folding in relation to) IT 7732-18-5 RL: BIOL (Biological study) (hydrophobicity, of amino acids and subgroups in globular proteins, folding dependence on) IT 52-90-4, L-Cysteine, properties 56-40-6, Glycine, properties 56-41-7, L-Alanine, properties 56-45-1, L-Serine, properties 56-84-8, L-Aspartic acid, properties 56-85-9, L-Glutamine, properties 56-86-0, L-Glutamic acid, properties 56-87-1, L-Lysine, properties 56-89-3, L-Cystine, properties 60-18-4, L-Tyrosine, properties 61-90-5, L-Leucine, properties 63-68-3, L-Methionine, properties 63-91-2, L-Phenylalanine, properties 70-47-3, L-Asparagine, properties 71-00-1, L-Histidine, properties 72-18-4, L-Valine, properties 72-19-5, L-Threonine, properties 73-22-3, L-Tryptophan, properties 73-32-5, L-Isoleucine, properties 74-79-3, L-Arginine, properties 147-85-3, L-Proline, properties RL: PRP (Properties) (surface area of, in protein folding, hydrophobicity in relation to) L3 ANSWER 21 OF 46 CA COPYRIGHT 1996 ACS AN 109:224780 CA TI Protein folding: new twists AU Fetrow, Jacquelyn S.; Zehfus, Micheal H.; ***Rose, George D.*** CS Sch. Med., Univ. Rochester, Rochester, NY, 14642, USA SO Bio/Technology (1988), 6(2), 167-71 CODEN: BTCHDA; ISSN: 0733-222X DT Journal; General Review LA English CC 6-0 (General Biochemistry) AB A review, with 46 refs., on protein folding and the proposed existence of an explicit stereochem. code for protein assembly. ST review protein conformation folding IT Proteins, properties RL: PRP (Properties) (conformation and folding of, genetic code in relation to) IT Protein formation (folding patterns during, genetic code in relation to) IT Conformation and Conformers (of proteins, genetic code in relation to) IT Genetic code (protein folding patterns in relation to) L3 ANSWER 22 OF 46 CA COPYRIGHT 1996 ACS AN 109:69048 CA TI Helix signals in proteins AU Presta, Leonard G.; ***Rose, George D.*** CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Science (Washington, D. C., 1883-) (1988), 240(4859), 1632-41 CODEN: SCIEAS; ISSN: 0036-8075 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 7 AB The helix hypothesis introduced here states that a necessary condition for helix formation is the presence of residues flanking the helix termini whose side chains can form H bonds with the initial 4-helix > N-H groups and final 4-helix > C-O groups; these 8 groups would otherwise lack intrahelical partners. This simple hypothesis implies the existence of a stereochem. code in which certain sequences have the H-bonding capacity to function as helix boundaries and thereby enable the helix to form autonomously. The 3-dimensional structure of a protein is a consequence of the genetic code, but the rules relating sequence to structure are still unknown. The ensuing anal. supports the idea that a stereochem. code for the .alpha. helix resides in its boundary residues. ST protein conformation helix sequence IT Amino acids, properties RL: PRP (Properties) (hydrogen bonding of, in .alpha.-helix conformation of proteins, prediction of) IT Hydrogen bond (in .alpha.-helix conformation of proteins, peptide sequence prediction of) IT Enzymes Proteins, properties RL: BIOL (Biological study) (.alpha.-helix conformation in, sequence prediction of, flanking residues role in) IT Protein sequences (.alpha.-helix conformation of proteins prediction by, flanking residues role in) IT Conformation and Conformers (.alpha.-helical, in proteins, sequence prediction of, flanking residues role in) IT 1333-74-0 RL: BIOL (Biological study) (hydrogen bond, in .alpha.-helix conformation of proteins, peptide sequence prediction of) L3 ANSWER 23 OF 46 CA COPYRIGHT 1996 ACS AN 108:2770 CA TI Hydrophobicity profiles revisited AU Dworkin, Jonathan E.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Methods Protein Sequence Anal., [Proc. Int. Conf.], 6th (1987), Meeting Date 1986, 573-86. Editor(s): Walsh, Kenneth A. Publisher: Humana, Clifton, N. J. CODEN: 56DFAZ DT Conference; General Review LA English CC 9-0 (Biochemical Methods) Section cross-reference(s): 6 AB A review with 25 refs. The assumptions and parameters of hydrophobicity profiles are discussed. Methodol. is described that allows error bars and confidence limits to be derived. A detailed comparison with exptl. data from x-ray elucidated proteins is also presented. ST review protein hydrophobicity profile IT Proteins, properties RL: PRP (Properties) (hydrophobicity profiles of, construction of) IT Hydrophobicity (of proteins, profiles of, construction of) IT 7732-18-5 RL: ANST (Analytical study) (hydrophobicity, of proteins, profiles of, construction of) L3 ANSWER 24 OF 46 CA COPYRIGHT 1996 ACS AN 106:194168 CA TI Immune recognition of proteins: conclusions, dilemmas and enigmas AU Smith, John A.; ***Rose, George D.*** CS Dep. Mol. Biol., Massachusetts Gen. Hosp., Boston, MA, 02115, USA SO BioEssays (1987), 6(3), 112-16 CODEN: BIOEEJ DT Journal; General Review LA English CC 15-0 (Immunochemistry) AB A review with 29 refs. of the structure of antigenic sites and their mol. interactions with antibodies, major histocompatibility complex-restriction elements, and T-lymphocyte receptors. ST review antigen structure antibody lymphocyte IT Antibodies RL: BIOL (Biological study) (antigen recognition by, structure in) IT Receptors RL: BIOL (Biological study) (for antigen, of T-cell, structure in relation to) IT Conformation and Conformers (of antigens, antibody and T-lymphocyte recognition in relation to) IT Antigens RL: PRP (Properties) (structure of, antibody and T-cell receptor recognition in relation to) IT Lymphocyte (T-, antigen recognition by, structure in) IT Antigens RL: BIOL (Biological study) (major histocompatibility complex, antigen recognition by, T-cell receptor structure in relation to) L3 ANSWER 25 OF 46 CA COPYRIGHT 1996 ACS AN 106:45920 CA TI Loops in globular proteins: a novel category of secondary structure AU Leszczynski, Jacquelyn F.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Science (Washington, D. C., 1883-) (1986), 234(4778), 849-55 CODEN: SCIEAS; ISSN: 0036-8075 DT Journal LA English CC 6-3 (General Biochemistry) AB The protein loop, a novel category of nonregular secondary structure, is a segment of contiguous polypeptide chain that traces a loop-shaped path in 3-dimensional space; the main chain of an idealized loop resembles the Greek letter .OMEGA.. A systematic study was made of 67 proteins of known structure revealing 270 .OMEGA. loops. Although such loops are typically regarded as random coil, they are, in fact, highly compact substructures and may also be independent folding units. Loops are almost invariably situated at the protein surface where they are poised to assume important roles in mol. function and biol. recognition. They are often obsd. to be modules of evolutionary exchange and are also natural candidates for bioengineering studies. ST loop conformation globular protein IT Proteins, specific or class RL: PRP (Properties) (globular, loop conformation in) IT Conformation and Conformers (.OMEGA. loop, in globular proteins) L3 ANSWER 26 OF 46 CA COPYRIGHT 1996 ACS AN 105:149238 CA TI Compact units in proteins AU Zehfus, Michael H.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Biochemistry (1986), 25(19), 5759-65 CODEN: BICHAW; ISSN: 0006-2960 DT Journal LA English CC 9-10 (Biochemical Methods) Section cross-reference(s): 6, 7 OS CJACS AB An explicit measure of geometric compactness called the coeff. of compactness is introduced. This single value figure of merit identifies those continuous segments of the polypeptide chain having the smallest solvent-accessible surface area for their vol. These segments are the most compact units of the protein, and the larger ones correspond to conventional protein domains. To demonstrate the plausibility of this approach as a method of identifying protein domains, the measure is applied to lysozyme and RNase to discover their constituent compact units. These units are then compared with domains, subdomains, and modules found by other methods. To show the sensitivity of the method, the measure is used to successfully differentiate between native and deliberately misfolded proteins [Novotny, J. et al., 1984]. Methods that utilize only backbone atoms to define domains cannot distinguish between authentic and misfolded mols. because their backbone conformations are virtually superimposable. Compact units identified by this method exhibit a hierarchic organization. Such an organization suggests possible folding pathways that can be tested exptl. ST compactness identification protein conformation; enzyme compact unit detection; surface area protein coeff compactness IT Immunoglobulins RL: PRP (Properties) (VL domain of, compactness of, identification of) IT Nomenclature, new concepts (coeff. of compactness) IT Hemerythrins Proteins RL: ANST (Analytical study) (compact units of, identification of, coeff. of compactness in) IT Conformation and Conformers (of proteins, compact units identification in, coeff. of compactness for) IT Surface area (of proteins, normalized measure of, coeff. of compactness as) IT 9001-63-2 9001-99-4 RL: ANST (Analytical study) (compact units of, identification of, coeff. of compactness in) L3 ANSWER 27 OF 46 CA COPYRIGHT 1996 ACS AN 105:21279 CA TI Molecular cartography of globular proteins with application to antigenic sites AU Fanning, David W.; Smith, John A.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Biopolymers (1986), 25(5), 863-83 CODEN: BIPMAA; ISSN: 0006-3525 DT Journal LA English CC 9-10 (Biochemical Methods) Section cross-reference(s): 6, 15 AB A method, mol. cartog., is introduced as a way to quantitate the topog. structure of a protein surface. The method is applied to the problem of antigenic determinants, and it is used to examine local and global topog. of reported antigenic regions on the surface of myoglobin and lysozyme. In nine antigenic sites taken from the literature and studied in detail, no local property was found in sites that was not also found in remaining regions of the surface. However, a strong correlation was found between antigenic sites and regions of the surface that are globally exposed. This finding suggests that global exposure of the protein surface may play a primary role in detg. the antigenic structure of the protein. Mol. cartog. may be useful in other instances of protein-protein interactions such as those between proteolytic enzymes and their substrates. ST globular protein topog cartog; antigenic site cartog globular protein IT Myoglobins RL: ANST (Analytical study) (cartog. of, antigenic sites in relation to) IT Antigens RL: ANST (Analytical study) (determinants, cartog. in study of) IT Surface structure (of globular proteins, cartog. in study of) IT Proteins RL: ANST (Analytical study) (globular, cartog. of, antigenic sites in relation to) IT 9001-63-2 RL: ANST (Analytical study) (cartog. of, antigenic sites in relation to) L3 ANSWER 28 OF 46 CA COPYRIGHT 1996 ACS AN 104:205063 CA TI Algorithmic identification of antigenic determinants in proteins of known structure AU Fanning, David W.; ***Rose, George D.*** ; Smith, John A. CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Pept.: Struct. Funct., Proc. Am. Pept. Symp., 9th (1985), 13-22. Editor(s): Deber, Charles M.; Hruby, Victor J.; Kopple, Kenneth D. Publisher: Pierce Chem. Co., Rockford, Ill. CODEN: 54ZNAJ DT Conference LA English CC 15-2 (Immunochemistry) AB Protein topog. maps of myoglobin and lysozyme were constructed and previously detd. antigenic sites were superimposed on the maps. The known epitopes corresponded generally, but not perfectly, to highly exposed regions of the mol. surface. ST antigen site lysozyme myoglobin structure; mol structure antigen lysozyme myoglobin IT Myoglobins RL: BIOL (Biological study) (antigenic determinants in, identification of, from protein topog. maps) IT Antigens RL: PROC (Process) (identification of, from protein topog. maps of lysozyme and myoglobin) IT Conformation and Conformers (of antigenic sites, of lysozyme and myoglobin, protein topog. maps in relation to) IT Molecular structure-biological activity relationship (antigenic, of lysozyme and myoglobin, protein topog. maps in relation to) IT 9001-63-2 RL: BIOL (Biological study) (antigenic determinants in, identification of, from protein topog. maps) L3 ANSWER 29 OF 46 CA COPYRIGHT 1996 ACS AN 104:182766 CA TI Fast approximations for accessible surface area and molecular volume of protein segments AU Zehfus, Micheal H.; Seltzer, Jack P.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Biopolymers (1985), 24(12), 2511-19 CODEN: BIPMAA; ISSN: 0006-3525 DT Journal LA English CC 9-10 (Biochemical Methods) Section cross-reference(s): 7 AB Equations are presented that approx. the accessible surface area of a continuous protein segment using the surface area of an inertial ellipsoid and that approx. the mol. vol. from the no. of nonhydrogen atoms in the segment. These approxns., which are appropriate for segments of 4 or more residues in length, are much faster to calc. than the exact solns., yet suffer only a 3-8% error. Included in an appendix are FORTRAN subroutines that calc. the surface area of an ellipsoid from its 3 principal moments of inertia. ST protein accessible surface area calcn; mol vol protein segment computer IT Proteins RL: ANST (Analytical study) (accessible surface are and mol. vol. detn. in segments of, equations and computer programs for) IT Ferredoxins Flavodoxins Myoglobins Rubredoxins RL: ANST (Analytical study) (accessible surface area and mol. vol. detn. in segments of, equations and computer programs for) IT Computer program (for accessible surface area and mol. vol. detn. in protein segments) IT Mathematics (equations, for accessible surface area and mol. vol. detn. in protein segments) IT Proteins RL: ANST (Analytical study) (iron-contg., high-potential, accessible surface area and mol. vol. detn. in segments of, equations and computer programs for) IT 1393-38-0 9001-63-2 9001-73-4 9001-99-4 9002-07-7 9004-06-2 9007-43-6, properties 9026-81-7 9054-89-1 9087-70-1 11028-71-0 11075-17-5 39279-27-1 RL: ANST (Analytical study) (accessible surface area and mol. vol. detn. in segments of, equations and computer programs for) L3 ANSWER 30 OF 46 CA COPYRIGHT 1996 ACS AN 104:107541 CA TI Antigenic determinants in proteins coincide with surface regions accessible to large probes (antibody domains) AU Novotny, Jiri; Handschumacher, Mark; Haber, Edgar; Bruccoleri, Robert E.; Carlson, William B.; Fanning, David W.; Smith, John A.; ***Rose, George D.*** CS Harvard Med. Sch., Massachusetts General Hosp., Boston, MA, 02114, USA SO Proc. Natl. Acad. Sci. U. S. A. (1986), 83(2), 226-30 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 15-2 (Immunochemistry) AB Surface areas on proteins that would be accessible to contacts with large (1-nm radius) spherical probes were studied. Such spheres are comparable in size to antibody domains that contain antigen-combining sites. All the reported antigenic sites correspond to segments particularly accessible to a large sphere. The antigenic sites were also evident as the most prominently exposed regions (hills and ridges) in contour maps of the solvent-accessible (small-probe) surface. In myoglobin and cytochrome c, virtually all of the van der Waals surface is accessible to the large probe and therefore potentially antigenic; in myohemerythrin, distinct large-probe-inacccessible, and nonantigenic, surface regions are apparent. The correlation between large-sphere-accessibility and antigenicity in myoglobin, lysozyme, and cytochrome c appears to be better than that reported to exist between antigenicity and segmental flexibility; i.e., surface regions that are rigid often constitute antigenic epitopes, whereas some of the flexible parts of the mols. do not appear antigenic. It is proposed that the primary reason why certain polypeptide-chain segments are antigenic is their exceptional surface exposure, making them readily available for contacts with antigen-combining sites. Exposure of these segments frequently results in high mobility and, in consequence, to the reported correlation between antigenicity and segmental flexibility. ST protein antigenic determinant surface region IT Myoglobins RL: PRP (Properties) (antigenic determinants on surface of, flexibility in relation to) IT Antigens RL: BIOL (Biological study) (determinants, on surface of proteins, flexibility in relation to) IT Molecular dynamics Molecular structure, natural product (of proteins, antigenic determinants of surface regions in relation to) IT Hemerythrins RL: PRP (Properties) (myo-, antigenic determinants on surface of, flexibility in relation to) IT 9001-63-2 9007-43-6, biological studies RL: PRP (Properties) (antigenic determinants on surface of, flexibility in relation to) L3 ANSWER 31 OF 46 CA COPYRIGHT 1996 ACS AN 104:104495 CA TI Molecular recognition in macromolecules AU ***Rose, George D.*** ; Lee, Richard H. CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Biophys. J. (1986), 49(1), 83-5 CODEN: BIOJAU; ISSN: 0006-3495 DT Journal; General Review LA English CC 6-0 (General Biochemistry) AB A review, with 12 refs., of topol. features of biopolymer recognition (assembly) sites and their modeling (by an algorithm). ST review macromol mol recognition; assembly macromol recognition site review; algorithm macromol recognition site review IT Algorithm (for biopolymer recognition site modeling) IT Molecular association (of biopolymers, recognition sites in, modeling of) IT Biopolymers RL: PRP (Properties) (recognition sites of, modeling of) L3 ANSWER 32 OF 46 CA COPYRIGHT 1996 ACS AN 104:48304 CA TI Automatic recognition of domains in globular proteins AU ***Rose, George D.*** CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Methods Enzymol. (1985), 115(Diffr. Methods Biol. Macromol. Pt. B), 430-40 CODEN: MENZAU; ISSN: 0076-6879 DT Journal LA English CC 9-10 (Biochemical Methods) Section cross-reference(s): 6, 7 AB The concept of structural domains in proteins and methods for recognizing them are discussed. An algorithm devised to optimize sequential subdivisions of a folded polypeptide chain into spatially distinct regions without regard for chem. particulars, such as residue type, H-bonding, or disulfide loops, is described. ST protein domain recognition algorithm IT Algorithm (for protein structural domain automatic recognition) IT Conformation and Conformers (of proteins, automatic recognition of domains in) IT Enzymes RL: PRP (Properties) (structural domains in, automatic recognition of) IT Proteins RL: PRP (Properties) (globular, structural domains in, automatic recognition of) L3 ANSWER 33 OF 46 CA COPYRIGHT 1996 ACS AN 103:209012 CA TI Turns in peptides and proteins AU ***Rose, George D.*** ; Gierasch, Lila M.; Smith, John A. CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, USA SO Adv. Protein Chem. (1985), 37, 1-109 CODEN: APCHA2; ISSN: 0065-3233 DT Journal; General Review LA English CC 6-0 (General Biochemistry) AB A review with 383 refs., of the structural and functional roles of conformational turns in proteins and peptides. ST review protein peptide conformation turn IT Proteins Peptides, properties RL: PRP (Properties) (conformational turns in, functional and structural roles of) IT Conformation and Conformers (of peptides and proteins, turns in, structure and function in relation to) L3 ANSWER 34 OF 46 CA COPYRIGHT 1996 ACS AN 103:174216 CA TI Hydrophobicity of amino acid residues in globular proteins AU ***Rose, George D.*** ; Geselowitz, Ari R.; Lesser, Glenn J.; Lee, Richard H.; Zehfus, Micheal H. CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Science (Washington, D. C., 1883-) (1985), 229(4716), 834-8 CODEN: SCIEAS; ISSN: 0036-8075 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 9 AB Two scales were derived, based on accessibility to solvent for residues in proteins of known structure, to measure the av. area that each residue buries upon folding. There is a simple linear relation between the area a residue buries on folding and its hydrophobicity, as measured by the .DELTA.G of transfer from water to org. solvent. In addn., the residues can be divided into 3 groups on the basis of the deriv. of their mean fractional area loss. ST amino acid hydrophobicity globular protein; area amino acid protein folding IT Amino acids, properties RL: PRP (Properties) (hydrophobicity of, in globular proteins, surface area burying in protein folding in relation to) IT Surface area (of amino acids, in globular protein folding, hydrophobicity in relation to) IT Hydrophobicity (of amino acids, of globular proteins, surface area burying in protein folding in relation to) IT Free energy (of folding, of globular proteins, amino acid surface area in relation to) IT Conformation and Conformers (of globular proteins, hydrophobicity-surface area relations in) IT Proteins RL: BIOL (Biological study) (globular, amino acid hydrophobicity in, in folding, residue surface area in relation to) L3 ANSWER 35 OF 46 CA COPYRIGHT 1996 ACS AN 103:137451 CA TI Molecular recognition. I. Automatic identification of topographic surface features AU Lee, Richard H.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Biopolymers (1985), 24(8), 1613-27 CODEN: BIPMAA; ISSN: 0006-3525 DT Journal LA English CC 6-7 (General Biochemistry) Section cross-reference(s): 9 AB The phenomenon of mol. recognition depends strongly on surface complementarity between assocg. mol. units, analogous to the assembly of a 3-dimensional jigsaw puzzle. The driving force for assocn. is solvent entropy, which increases when protrusions of the irregular surface of 1 subunit fit snugly into invaginations of the other, squeezing out intervening water. To model this process, an algorithm is presented that automatically finds the prominent topog. surface features of rigid .alpha.-helixes in proteins of known structure. When the algorithm was applied to 2 interacting helixes from flavodoxin, only a small no. of such features were found, and they accounted for the obsd. complementarity. By using this algorithm, mol. docking can be reduced to a tractable problem by a docking strategy based on exhaustive trial of combinations of surface features. ST mol recognition model algorithm; biopolymer surface feature analysis algorithm; protein conformation surface interaction computer algorithm; flavodoxin helix interaction mol recognition model IT Algorithm (for anal. of topog. surface features of proteins, mol. recognition in relation to) IT Computer application (for protein topog. surface feature anal., mol. recognition in relation to) IT Flavodoxins Proteins RL: BIOL (Biological study) (mol. recognition and docking in, algorithm for anal. of) IT Biopolymers RL: BIOL (Biological study) (mol. recognition in, topog. surface feature anal. in relation to) IT Molecular association (of proteins, topog. surface features in, algorithm for identification of) IT Conformation and Conformers (.alpha.-helical, of proteins, in mol. recognition, algorithm for anal. of mol. docking in relation to) L3 ANSWER 36 OF 46 CA COPYRIGHT 1996 ACS AN 101:73092 CA TI Reverse turns in hydrophobic environments AU Lacy, Jeffrey E.; Gierasch, Lila M.; Rockwell, Arlene L.; ***Rose, George D.*** CS Dep. Chem., Univ. Delaware, Newark, DE, 19711, USA SO Pept.: Struct. Funct., Proc. Am. Pept. Symp., 8th (1983), 781-4. Editor(s): Hruby, Victor J.; Rich, Daniel H. Publisher: Pierce Chem. Co., Rockford, Ill. CODEN: 51KAAK DT Conference LA English CC 34-3 (Amino Acids, Peptides, and Proteins) Section cross-reference(s): 6, 22 AB The effect of a hydrophobic environment on the tendency of a polypeptide chain to adopt reverse turn conformations was examd. by (1) a computer search of globular proteins of known structure and (2) NMR and CD spectral studies of synthetic peptides designed to model hydrophobic turn sequences. A search of 22 proteins revealed 9 interior turns in which polar groups are H bonded either to water or to other groups on the protein. The NMR and CD spectra of R-X-D-Phe-D-Ala-L-Pro-NHMe [R = Me3CO2C, X = null (I); R = PhCH2O2C, X = Pro (II)] solubilized in Na dodecyl sulfate (SDS) micelles showed that I does not adopt a turn conformation, but the C-terminal part of II adopts a .gamma. turn conformation. Me3CO2C-D-Tyr-Gly-L- Ile-L-Leu-L-Gln-L-Pro-OH assumes a folded conformation in MeOH, Me2SO, and aq. SDS solns. ST conformation reverse turn peptide; hydrophobic soln conformation peptide; hydrogen bond conformation peptide IT Peptides, properties RL: PRP (Properties) (conformation of, in hydrophobic environments) IT Hydrogen bond (in peptides, reverse turn conformations in hydrophobic environments in relation to) IT Conformation and Conformers (reverse-turn, of peptides in hydrophobic environment) IT 84952-41-0 91302-80-6 91302-81-7 RL: PRP (Properties) (conformation of, in hydrophobic environments) L3 ANSWER 37 OF 46 CA COPYRIGHT 1996 ACS AN 99:118083 CA TI Interior turns in globular proteins AU ***Rose, George D.*** ; Young, William B.; Gierasch, Lila M. CS Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, 17033, USA SO Nature (London) (1983), 304(5927), 654-7 CODEN: NATUAS; ISSN: 0028-0836 DT Journal LA English CC 6-3 (General Biochemistry) AB Reverse turns buried in the hydrophobic interior of globular proteins were investigated in proteins of known sequence. In every instance of a buried turn, .gtoreq.1 water mol. was found in a H-bonded complex with main-chain atoms of the turn residues. Each of the water mols. bound to an interior turn had .gtoreq.3 H-bonds. Moreover, each polar group in these turns was H-bonded to either a water mol. or to another interior polar group of the protein. Instances of bifurcated H-bonds to these groups were also obsd. The no. d. of individual water mols. H-bonded to an internal turn was calcd. and showed that these water mols. were themselves buried deep within the protein and not part of the bulk solvent. Thus, constraints placed upon turns in a hydrophobic environment are satisfied by incorporating water mols. into the structure as though they were prosthetic groups. ST conformation protein water hydrogen bond; water protein interior turn stabilization IT Hydrogen bond (between protein polar residues and water, interior turn stabilization in relation to) IT Conformation and Conformers (of globular proteins, interior turns in, hydrogen-bonded water in) IT Water of hydration (protein interior turns stabilization by) IT Proteins RL: BIOL (Biological study) (globular, interior turns in, hydrogen-bonded water in) IT 9001-63-2 9001-84-7 9002-07-7 9002-08-8 9013-53-0 RL: BIOL (Biological study) (interior turns in, hydrogen-bonded water in) IT 9004-07-3 RL: BIOL (Biological study) (.gamma., interior turns in, hydrogen-bonded water in) L3 ANSWER 38 OF 46 CA COPYRIGHT 1996 ACS AN 99:34751 CA TI Hierarchic organization of globular proteins. A control study AU Yuschok, Thomas J.; ***Rose, George D.*** CS Milton S. Hershey Med. Cent., Pennsylvania State Univ., Hershey, PA, USA SO Int. J. Pept. Protein Res. (1983), 21(5), 479-84 CODEN: IJPPC3; ISSN: 0367-8377 DT Journal LA English CC 6-3 (General Biochemistry) AB In previous work, globular proteins of known structure were shown to be iteratively subdivisible into a hierarchy of disjunct, contiguous-chain regions ranging from whole protein monomers down to individual helixes and strands. The results of a similar anal., performed on a set of 1000 simulated chain folds generated by the method of G. E. Schulz (1980), were reported. The organization of these simulated proteins was similar to that of authentic mols. This study strengthens earlier evidence suggesting that hierarchic architecture is a ubiquitous attribute of protein chain folds. ST globular protein conformation hierarchic organization IT Conformation and Conformers (of globular proteins, hierarchic organization in) IT Proteins RL: PRP (Properties) (globular, conformation of, hierarchic organization in) L3 ANSWER 39 OF 46 CA COPYRIGHT 1996 ACS AN 95:128663 CA TI Folding units in globular proteins AU Lesk, Arthur M.; ***Rose, George D.*** CS Fairleigh Dickinson Univ., Teaneck, NJ, 07666, USA SO Proc. Natl. Acad. Sci. U. S. A. (1981), 78(7), 4304-8 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 9-4 (Biochemical Methods) Section cross-reference(s): 6, 34 AB A method is presented to identify all compact, contiguous-chain, structural units in a globular protein from x-ray coordinates. These units are then used to describe a complete set of hierarchic folding pathways for the mol. The larger units are combinations of smaller units, giving rise to a structural hierarchy ranging from the whole protein monomer through supersecondary structures down to individual helixes and strands. There is more than 1 way to assemble the protein by self-assocn. of its compact units. However, the no. of possible pathways is small enough to be exhaustively explored by a computer program. The hierarchic organization of compact units in protein mols. is consistent with a model for folding by hierarchic condensation. In this model, neighboring hydrophobic chain sites interact to form folding clusters, with further stepwise cluster assocn. giving rise to a population of folding intermediates. ST computer application globular protein structure; globular protein folding unit detn; x ray protein structure IT Algorithm Computer program (for globular protein structure detn.) IT Computer application (in globular protein structure detn.) IT Myoglobins RL: PRP (Properties) (structure of, computer program for study of folding units in) IT Chains, chemical (structure of, of proteins, computer program for study of folding units in) IT Proteins RL: PRP (Properties) (globular, structure of, computer program for study of folding units in) IT 9001-99-4 RL: PRP (Properties) (structure of, computer program for study of folding units in) L3 ANSWER 40 OF 46 CA COPYRIGHT 1996 ACS AN 93:199540 CA TI Hydrophobic basis of packing in globular proteins AU ***Rose, George D.*** ; Roy, Siddhartha CS Dep. Chem., Univ. Delaware, Newark, DE, 19711, USA SO Proc. Natl. Acad. Sci. U. S. A. (1980), 77(8), 4643-7 CODEN: PNASA6; ISSN: 0027-8424 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 7 AB The self-assembly of globular proteins is often described as a nucleation process in which the H bonding in segments of secondary structure is the precondition for further folding. This concept is unlikely because both the buried interior regions and the peptide chain turns of the folded protein (i.e., inside and outside) are predicted solely by the hydrophobicity of the residues, taken in sequential order along the chain. The helixes and strands span the protein, and this obsd. secondary structure is seen to coincide with the regions predicted to be buried from hydrophobicity considerations alone. Linear chain regions rich in hydrophobic residues serve as small clusters that fold against each other, with concomitant or even later fixation of secondary structure. A helix or strand would arise in this folding process as 1 of a few energetically favorable alternatives for a given cluster, followed by a shift in the equil. between secondary structure conformers on cluster assocn. The linear chain hydrophobicity alternates between locally maximal and minimal values, and these extrema partition the polypeptide chain into structural segments. This partitioning is seen in the x-ray structure as isodirectional segments bracketed between peptide chain turns, with the segments expressed most often as helixes and strands. The segment interactions define the geometry of the mol. interior and the chain turns describe the predominant features of the mol. coastline. The segmentation of the mol. by linear chain hydrophobicity imposes a major geometric constraint on possible folding events. ST folding protein hydrophobicity; conformation protein hydrophobicity; enzyme folding hydrophobicity IT Flavodoxins Myoglobins Parvalbumins RL: BIOL (Biological study) (folding of, hydrophobic domains in relation to) IT Chains, chemical (packing of, of proteins, hydrophobic domains in relation to) IT Hydrophobicity (protein packing in relation to) IT Proteins RL: BIOL (Biological study) (globular, folding of, hydrophobic domains in relation to) IT 9001-99-4 RL: BIOL (Biological study) (A, folding of, hydrophobic domains in relation to) IT 9001-63-2 9087-70-1 RL: BIOL (Biological study) (folding of, hydrophobic domains in relation to) L3 ANSWER 41 OF 46 CA COPYRIGHT 1996 ACS AN 92:53654 CA TI Hierarchic organization of domains in globular proteins AU ***Rose, George D.*** CS Dep. Chem., Univ. Delaware, Newark, DE, 19711, USA SO J. Mol. Biol. (1979), 134(3), 447-70 CODEN: JMOBAK; ISSN: 0022-2836 DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 7 AB An automatic procedure was developed for the identification of domains in globular proteins from x-ray-elucidated coordinates. Using this tool, domains were shown to be iteratively decomposable into subdomains, leading to a hierarchic mol. architecture. There is no convenient geometry that will fully characterize the atom by atom interdigitation at an interface between domains, and the strategy adopted here was devised to reduce this unwieldy 3-dimensional problem to a closely approximating companion anal. in a plane. These anal. derived domain choices can be used subsequently to construct computer-generated, space-filling, color-coded views of the domains; and when this is done, the derived domains are seen to be completely resolved. The no. of domains in a protein is a math. well-behaved function of the chain length, lending support to the supposition that the domains are an implicit structural consequence of the folding process. A spectrum of domains ranging in size from whole protein monomers to the individual units of secondary structure was apparent in each of 22 proteins analyzed. The hierarchic organization of structural domains is evidence in favor of an underlying protein folding process that proceeds by hierarchic condensation. In this highly constrained model, every pathway leading to the native state can be described by a tree of local folding interactions. ST protein domain hierarchic organization; enzyme domain hierarchic organization IT Chains, chemical (conformation of, of globular proteins, hierarchic organization of domains in) IT Flavodoxins Myogens Rubredoxins RL: PRP (Properties) (domain structure of) IT Proteins RL: PRP (Properties) (globular, domains in, hierarchic organization of) IT Proteins RL: PRP (Properties) (iron-contg., high-potential, domain structure of) IT 9001-03-0 RL: BIOL (Biological study) (B, domain structure of) IT 9001-50-7 9001-51-8 9001-60-9 9001-63-2 9001-73-4 9001-99-4 9004-07-3 9007-43-6, properties 9014-01-1 9031-72-5 9032-62-6 9035-39-6 9054-89-1 9087-70-1 11028-71-0 11075-17-5 RL: PRP (Properties) (domain structure of) L3 ANSWER 42 OF 46 CA COPYRIGHT 1996 ACS AN 89:55012 CA TI Prediction of chain turns in globular proteins on a hydrophobic basis AU ***Rose, George D.*** CS Dep. Chem., Univ. Delaware, Newark, Del., USA SO Nature (London) (1978), 272(5654), 586-90 CODEN: NATUAS; ISSN: 0028-0836 DT Journal LA English CC 6-3 (General Biochemistry) AB The hypothesis is proposed that peptide chain turns in globular proteins occur at those sites in the polypeptide chain where the hydrophobicity is at a local min. A method was presented for locating the turns specified by this hypothesis by examg. the amino acid sequence and amino acid hydrophobicities. A favorable comparison of measured and predicted turns for adenyl kinase is made. In addn., the hypothesis accounts for the hydrophobic core of proteins. ST peptide chain turn protein hypothesis; protein hydrophobic structure hypothesis IT Chains, chemical (conformation of, of globular proteins, prediction of turns in) IT Amino acids, properties RL: PRP (Properties) (hydrophobicity of side-chains of, prediction of chain turns in globular proteins in relation to) IT Hydrophobicity (of amino acid side chains, prediction of chain turns in globular proteins in relation to) IT Proteins RL: PRP (Properties) (globular, conformation of, prediction of chain turns in) IT 9013-02-9 RL: PRP (Properties) (conformation of, prediction of chain turns in) L3 ANSWER 43 OF 46 CA COPYRIGHT 1996 ACS AN 88:84753 CA TI The number of turns in globular proteins AU ***Rose, George D.*** ; Wetlaufer, Donald B. CS Dep. Chem., UNiv. Delaware, Newark, Del., USA SO Nature (London) (1977), 268(5622), 769-70 CODEN: NATUAS DT Journal LA English CC 6-3 (General Biochemistry) AB Two possible models explaining the turn formation in peptide chains of globular proteins emerged after examn. of the no. of turns in 21 proteins ranging in size from 53-450 amino acid residues. The no. of turns was a linear function of the no. of amino acid residues in the protein. A sequence anal. of myoglobin detd. sequence dependent sites still discernible after folding, which was interpreted as partitioning the protein into its structural segments and turns by local sequences of amino acids. The interpretation was consistent with the model of R. (1976). ST protein globular peptide turn; myoglobin peptide turn IT Peptides, properties RL: PRP (Properties) (chain folding of, in globular proteins, calcn. of) IT Chains, chemical (folding of, in globular proteins, model of) IT Proteins RL: BIOL (Biological study) (globular, turns in, no. of, model for) L3 ANSWER 44 OF 46 CA COPYRIGHT 1996 ACS AN 87:97611 CA TI A new algorithm for finding the peptide chain turns in a globular protein AU ***Rose, George D.*** ; Seltzer, Jack P. CS Dep. Chem., Univ. Delaware, Newark, Del., USA SO J. Mol. Biol. (1977), 113(1), 153-64 CODEN: JMOBAK DT Journal LA English CC 6-3 (General Biochemistry) Section cross-reference(s): 7 AB An algorithm is presented to identify peptide chain turns from x-ray-elucidated coordinate data. Chain turns are those regions in a globular protein where the backbone is folded back upon itself. The algorithm presented here uses only the .alpha.C coordinates for every residue in the protein. No other information is required; notions about H bonding at these loci are irrelevant to the geometric nature of the argument. The algorithm provides an objective criterion for the recognition of turns as strictly structural components in proteins. The algorithm is used to find the turns in a test set of proteins. Results of this application are in excellent agreement with visual turn identification from phys. models. ST protein chain folding algorithm; enzyme chain folding algorithm IT Enzymes Flavodoxins Proteins RL: PRP (Properties) (conformation of, folding in, algorithm for) IT Chains, chemical (folding of, of proteins, algorithm for) IT Algorithm (for chain folding, in proteins) IT 9001-99-4 RL: BIOL (Biological study) (S, conformation of, folding in, algorithm for) IT 9001-63-2 9014-01-1 9026-81-7 9035-81-8 RL: PRP (Properties) (conformation of, folding in, algorithm for) L3 ANSWER 45 OF 46 CA COPYRIGHT 1996 ACS AN 86:12895 CA TI Orientation of structural segments in globular proteins AU Wetlaufer, Donald B.; ***Rose, George D.*** ; Taaffe, Laurence CS Med. Sch., Univ. Minnesota, Minneapolis, Minn., USA SO Biochemistry (1976), 15(23), 5154-7 CODEN: BICHAW DT Journal LA English CC 6-3 (General Biochemistry) AB Twelve globular proteins were examd. to test whether structural segments are oriented at random. Structural segments are defined as the primary sequence of linear chain neighbors bounded by consecutive peptide chain turns. A structural segment can be well approximated by a straight-line segment. Each protein in the test set was exhaustively partitioned into its constituent structural segments. A method is presented for comparing pairwise intersegment orientations. Within a protein, 3-dimensionally close segments exhibit a pronounced tendency toward parallel orientation, whereas distant segments are randomly oriented. Some conclusions are presented relating to the general problem of segment packing in globular proteins. ST protein structure segment orientation IT Flavodoxins RL: PRP (Properties) (structural segment orientation in) IT Proteins RL: PRP (Properties) (globular, structural segment orientation in) IT 9001-60-9 9001-63-2 RL: PRP (Properties) (structural segment orientation in) L3 ANSWER 46 OF 46 CA COPYRIGHT 1996 ACS AN 84:131764 CA TI A testable model for protein folding AU ***Rose, George D.*** ; Winters, Ronald H.; Wetlaufer, Donald B. CS Comput. Cent., Oregon State Univ., Corvallis, Oreg., USA SO FEBS Lett. (1976), 63(1), 10-16 CODEN: FEBLAL DT Journal LA English CC 6-3 (General Biochemistry) AB A testable, biphasic model for protein folding is formulated. In this model, linearly short and medium range interactions dominate early folding, causing the chain to assume independently nucleated modules of persisting structure termed Local Independently Nucleated Continuous segments (LINCs). In a later stage of folding, the LINCs fold relative to each other, and it is only at this time that the protein assumes its characteristic interior and exterior and its overall globular structure. In the perspective of this model, a computational approach is outlined, requiring 1st a systematic examn. of steric and energetic constraints that can be calcd. with some confidence by accepted means. The sterically allowed conformation was calcd. for: (1) a post-helical residue situated at the C-terminal end of a backbone-only helix, (2) various side-chains of an intrahelical residue, and (3) the constraints imposed on lysine and arginine side-chains if some accounting is made for hydration of the resp. cationic side-chain moieties. Substantial steric constraints were engendered in all 3 cases. ST protein folding model; conformation protein model IT Proteins RL: BIOL (Biological study) (folding of, model for) IT Chains, chemical (folding of, of proteins, model for) => s expand rose g/au E1 1 ROSE FRIEDRICH W/AU E2 20 ROSE FRITZ/AU E3 55 --> ROSE G/AU E4 21 ROSE G A/AU E5 27 ROSE G ALAN/AU E6 6 ROSE G D/AU E7 1 ROSE G E/AU E8 2 ROSE G G/AU E9 3 ROSE G L/AU E10 5 ROSE G M/AU E11 9 ROSE G P/AU E12 3 ROSE G R/AU => s e3 and e or e6 55 "ROSE G"/AU 6 "ROSE G D"/AU L4 61 "ROSE G"/AU OR "ROSE G D"/AU => display l4 1-61 all L4 ANSWER 1 OF 61 CA COPYRIGHT 1996 ACS AN 124:102177 CA TI Fast deposition of polycrystalline silicon films by hot-wire CVD AU Middya, A. R.; Lloret, A.; Perrin, J.; Huc, J.; Moncel, J. L.; Parey, J. Y.; ***Rose, G.*** CS Lab. Phys. Interfaces Couches Minces, Ecole Polytech., Palaiseau, F-91128, Fr. SO Mater. Res. Soc. Symp. Proc. (1995), 377(Amorphous Silicon Technology-1995), 119-24 CODEN: MRSPDH; ISSN: 0272-9172 DT Journal LA English CC 75-1 (Crystallography and Liquid Crystals) AB Polycryst. Si thin films were deposited at fast growth rates (50 .ANG./s) by hot-wire CVD (HW-CVD) from SiH4/H2 gas mixts. at low substrate temp. (400-500.degree.). The surface morphol. of these films consists of 0.5-2.0 .mu.m dendritic grains as seen by electron microscopy. The films have a columnar morphol. with grains starting from the substrate either on glass or c-Si. Even the 150 nm thick initial layer is polycryst. The preferential cryst. orientation of the poly-Si film is apparently not governed by the radiative source but strongly depends on the type and orientation of the substrate. A strong H diln. (>90%) of silane is essential to obtain poly-Si films with optimal cryst. structure. ST fast deposition polycryst silicon film CVD IT Vapor deposition processes (hot-wire; of polycryst. silicon films) IT Crystallization (of silicon films by fast hot-wire CVD) IT Surface structure (of silicon polycryst. films grown by hot-wire CVD) IT 7440-21-3, Silicon, processes RL: PEP (Physical, engineering or chemical process); PROC (Process) (fast deposition of polycryst. silicon films by hot-wire CVD) L4 ANSWER 2 OF 61 CA COPYRIGHT 1996 ACS AN 121:150497 CA TI The first genetic marker detected in the promoter region of the thyroid peroxidase gene by single-strand conformational polymorphism analysis AU ***Rose, G.*** ; De Luca, M.; Leone, O.; Falcone, E.; Chimienti, G.; Pepe, G.; Giacchetto, C.; De Benedictis, G. CS Cell Biol. Dep., Univ. Calabria, Rende, Italy SO Hum. Mutat. (1993), 2(5), 418-19 CODEN: HUMUE3; ISSN: 1059-7794 DT Journal LA English CC 3-6 (Biochemical Genetics) Section cross-reference(s): 13 AB PCR-single-strand conformational polymorphism (SSCP) anal. revealed 2 codominant alleles, TPO*P1 and TPO*P2. Family anal. confirmed the Mendelian inheritance of the polymorphism. The *P1 and *P2 allelic frequencies were 0.567 and 0.433, esp., and the genotypic distribution was in Hardy-Weinberg equil. DNA sequencing of the polymorphic fragment performed on PCR products from 3 different phenotypes indicated that the *P1 and *P2 alleles can be regarded as haplotypes. Thus, PCR-SSCP detected the 1st genetic marker in a DNA region crucial for TPO gene expression. ST thyroid peroxidase gene promoter marker IT Gene, animal RL: BIOL (Biological study) (TPO, for thyroid peroxidase, genetic marker in promoter region of human) IT Genetic element RL: BIOL (Biological study) (promoter, genetic marker in, of human thyroid peroxidase gene) IT 9031-28-1, Thyroid peroxidase RL: BIOL (Biological study) (gene for, genetic marker in promoter region of human) L4 ANSWER 3 OF 61 CA COPYRIGHT 1996 ACS AN 120:155442 CA TI Rapid identification of VNTR alleles of the human thyroid peroxidase gene by PCR: A study in a population sample from south Italy AU ***Rose, G.*** ; De Luca, M.; Falcone, E.; Giacchetto, C.; De Benedictis, G. CS Cell Biol. Dep., Univ. Calabria, Calabria, Italy SO Genomics (1993), 17(3), 796-8 CODEN: GNMCEP; ISSN: 0888-7543 DT Journal LA English CC 3-3 (Biochemical Genetics) Section cross-reference(s): 13 AB VNTR alleles of the human thyroid peroxidase gene were detd. by PCR. Frequencies of alleles in a population sample from south Italy are reported. This VNTR polymorphism maybe useful in forensic and genetic studies. ST human thyroid peroxidase gene polymorphism IT Genetic polymorphism (VNTR, of human thyroid peroxidase gene) IT Polymerase chain reaction (for identification of VNTR alleles of human thyroid peroxidase gene) IT Gene, animal RL: BIOL (Biological study) (for thyroid peroxidase of human, PCR detection of VNTR polymorphic alleles of) IT 153574-61-9 153574-62-0 RL: PRP (Properties) (as DNA primer in polymerase chain reaction, for identification of VNTR alleles of human thyroid peroxidase gene) IT 9031-28-1, Thyroid peroxidase RL: PRP (Properties) (human gene for, PCR detection of VNTR polymorphic alleles of) L4 ANSWER 4 OF 61 CA COPYRIGHT 1996 ACS AN 119:215042 CA TI Two-fluid interpretation of the conductivity of clean BCS superconductor AU Berlinsky, A. John; Kallin, C.; ***Rose, G.*** ; Shi, A. C. CS Inst. Mater. Res., McMaster Univ., Hamilton, ON, L8S 4M1, Can. SO Phys. Rev. B: Condens. Matter (1993), 48(6), 4074-9 CODEN: PRBMDO; ISSN: 0163-1829 DT Journal LA English CC 76-4 (Electric Phenomena) AB The temp. and frequency dependence of the microwave and optical cond. are studied for a BCS superconductor with weak elastic scattering [1/.tau.<2.DELTA.(0), where .tau. is the scattering time and .DELTA.(T) is the BCS energy gap]. The results are interpreted in terms of a two-fluid model in which the combined oscillator strength of the .delta. function at the origin and the thermally excited free-carrier cond. is found to be only weakly temp. dependent. The low-frequency cond. is a function of .omega..tau., in the clean limit, with a characteristic logarithmic divergence at .omega.=0. The frequency dependence of the microwave surface resistance is discussed and comparison is made to the recent exptl. results of Bonn, Hardy, and co-worker on YBa2Cu3O7-.delta. single crystals. ST cond BCS superconductor two fluid model IT Superconductors (two-fluid model of BCS) IT Superconductivity (two-fluid model of, of BCS superconductors) IT Electric resistance (surface, microwave-frequency-dependent, of BCS superconductors, two-fluid model and) L4 ANSWER 5 OF 61 CA COPYRIGHT 1996 ACS AN 116:208951 CA TI Acyl-RFLP in intron 8 of hTPO gene AU ***Rose, G.*** ; Leone, O.; Giacchetto, C.; De Benedictis, G. CS Cell Biol. Dep., Univ. Calabria, Rende, Italy SO Nucleic Acids Res. (1992), 20(5), 1162 CODEN: NARHAD; ISSN: 0305-1048 DT Journal LA English CC 3-3 (Biochemical Genetics) Section cross-reference(s): 13 AB Two primers TPO-8a and TPO-8b were used to amplify a 755bp long fragment of the TPO gene including exon 8 plus 18bp upstream and 219bp downstream of this exon. After PCR amplification the products were digested by AcyI restriction endonuclease and electrophoresed on 6% Nu Sieve Agarose. The published sequence (Kimura et al., 1987) reports five AcyI sites on this target. The two bands due to the AcyI site located 114bp downstream of exon 8 resulted clearly polymorphic: the 64bp and 59bp long fragments (G1) were replaced in some examples by one band of 123bp (G2) (loss of AcyI site). The other expected bands were present in all the samples. Frequencies were estd. in 49 unrelated Caucasians. Co-dominant segregation shown in one pedigree (18 individuals with 8 significant meioses). ST gene TPO intron polymorphism human IT Proteins, specific or class RL: BIOL (Biological study) (gene TPO, polymorphism in intron 8 of gene for, of human) IT Gene, animal RL: BIOL (Biological study) (TPO, of human, polymorphism in intron 8 of) IT Genetic polymorphism (AcyI, in gene TPO intron 8, of human) IT Genetic element RL: BIOL (Biological study) (intron, 8, of gene TPO of human, polymorphism in) L4 ANSWER 6 OF 61 CA COPYRIGHT 1996 ACS AN 115:166261 CA TI Characterization of composite membranes by their nonequilibrium thermodynamic transport parameters AU Forgach, D. J.; ***Rose, G. D.*** ; Luteneske, N. E. CS Cent. Res., Dow Chem. Co., Midland, MI, 48674, USA SO Desalination (1991), 80(2-3), 275-92 CODEN: DSLNAH; ISSN: 0011-9164 DT Journal LA English CC 61-5 (Water) Section cross-reference(s): 38 AB Composite reverse osmosis membranes were prepd. by interfacially polymg. arom. polyamide discriminating layers on the inside surface of microporous polyethersulfone hollow fibers and on the surface of flat sheet polysulfone ultrafilters. The salt rejection and flux of these membranes were measured at various feed pressures. From these measurements, the membrane reflection coeffs., salt permeances and hydraulic permeances were estd. Neither the polysulfone ultrafilters nor the microporous polyethersulfone hollow fibers possessed any inherent salt rejecting capability. Both had a hydraulic permeance .gtoreq.2 orders of magnitude greater than that of the resp. composite membranes. Consequently, it was concluded that the estd. transport parameters for both composite membranes were characteristic exclusively of their polyamide discriminating layers. Comparison of these transport parameters generated insight into structural and functional aspects of the membrane that can not be visualized by SEM. ST composite membrane reverse osmosis water; thermodn transport parameter composite membrane IT Polyamides, uses and miscellaneous RL: OCCU (Occurrence) (hollow fiber reverse osmosis membrane from polyethersulfones and, nonequil. thermodn. transport parameters for, water purifn. in relation to) IT Permeability and Permeation (of salts through composite membranes, water purifn. in relation to) IT Polysulfones, uses and miscellaneous RL: USES (Uses) (polyether-, hollow fiber reverse osmosis membranes from arom. polyamides and,) IT Polyethers, uses and miscellaneous RL: USES (Uses) (polysulfone-, hollow fiber reverse osmosis membranes from arom. polyamides and,) IT Water purification (reverse osmosis, composite membranes for, nonequil. thermodn. transport parameters for) IT 83044-99-9, m-Phenylene diamine-trimesoyl chloride copolymer RL: OCCU (Occurrence) (hollow fiber reverse osmosis membrane from polyethersulfones and, nonequil. thermodn. transport parameters for, water purifn. in relation to) IT 7732-18-5 RL: AMX (Analytical matrix); ANST (Analytical study) (permeability and Permeation, of salts through composite membranes, water purifn. in relation to) L4 ANSWER 7 OF 61 CA COPYRIGHT 1996 ACS AN 115:165533 CA TI Urea injection nitrogen oxide (NOx) removal in European coal-fired boilers and MSW incineration plants AU Jones, D. G.; Negrea, Stefan; Lautenschlager, G.; ***Rose, G.*** ; Smith, R. A.; Shiomoto, G. H. CS Noell-KRC, Visalia, CA, USA SO Proc. - A&WMA Annu. Meet. (1990), 83rd(Vol. 2), 90/32.3, 14 pp. CODEN: PAMEE5; ISSN: 1052-6102 DT Journal LA English CC 59-4 (Air Pollution and Industrial Hygiene) Section cross-reference(s): 51, 60 AB Data from 2 European applications of an advanced urea injection technol. show 50-70% NOx removal from waste incineration flue gases with relatively low levels of NH3 slip. In both cases, proprietary injection nozzle systems were used to provide mixing and distribution of small amts. of urea into large vols. of crossflowing flue gas. The data also show high levels of DeNOx performance achieved using urea injection at flue gas temps. .apprx.1600-1900 F. Com.-available urea can be used in a water mixt., and no other chems. or additives are necessary. Relatively high levels of NOx removal can be obtained using urea injection and properly-designed injection nozzle systems in large-scale boilers. ST nitrogen oxide removal incineration flue gas; waste incineration gas denitration urea injection; flue gas denitration urea injection IT Incineration (flue gases from, nitrogen oxide removal from, advanced urea injection DeNOx process for) IT Boilers (coal-fired, flue gases from, nitrogen oxide removal from, advanced urea injection DeNOx process for) IT Flue gases (incinerator, nitrogen oxide removal from, advanced urea injection DeNOx process for) IT 57-13-6, Urea, uses and miscellaneous RL: USES (Uses) (nitrogen oxide removal by injection of, from incinerator flue gases, advanced DeNOx method for) IT 7664-41-7, Ammonia, uses and miscellaneous RL: USES (Uses) (release and control of, in incinerator flue gas denitration by advanced urea injection DeNOx process) IT 11104-93-1, Nitrogen oxide, uses and miscellaneous RL: REM (Removal or disposal); PROC (Process) (removal of, from incinerator flue gases, advanced urea injection technol. for) L4 ANSWER 8 OF 61 CA COPYRIGHT 1996 ACS AN 115:128994 CA TI AcyI-RFLP identified on an amplified region of the TPO gene AU ***Rose, G.*** ; Giacchetto, C.; De Benedictis, G. CS Cell Biol. Dep., Univ. Calabria, Rende, Italy SO Nucleic Acids Res. (1991), 19(14), 4021 CODEN: NARHAD; ISSN: 0305-1048 DT Journal LA English CC 3-3 (Biochemical Genetics) Section cross-reference(s): 13 AB Polymerase chain reaction primers were designed to detect an AcyI restriction fragment length polymorphism (RFLP) of the human thyroid peroxidase gene located on chromosome 2pter-p12. An inspection of the ref. sequence showed that an A .fwdarw. C mutation 212 bp upstream from exon 10 was the origin of the AcyI restriction site (Allele - : GGAGCC .fwdarw. Allele + : GGCGCC). The frequencies of allele + and allele - were 0.66, and 0.34, resp., in 64 unrelated caucasians. Codominant segregation was obsd. in 6 families. ST thyroid peroxidase gene AcyI RFLP human; polymorphism thyroid peroxidase gene human IT Gene and Genetic element, animal RL: BIOL (Biological study) (for thyroid peroxidase, of human, restriction fragment length polymorphism in) IT Chromosome (human 2, thyroid peroxidase gene on, restriction fragment length polymorphism in) IT Genetic polymorphism (restriction fragment length, in thyroid peroxidase gene of human) IT 9031-28-1, Thyroid peroxidase RL: PRP (Properties) (gene for human, AcyI restriction fragment length polymorphism in) L4 ANSWER 9 OF 61 CA COPYRIGHT 1996 ACS AN 114:252992 CA TI Blood lead concentration, renal function, and blood pressure in London civil servants AU Staessen, J.; Yeoman, W. B.; Fletcher, A. E.; Markowe, H. L. J.; Marmot, M. G.; ***Rose, G.*** ; Semmence, A.; Shipley, M. J.; Bulpitt, C. J. CS R. Postgrad. Med. Sch., Hammersmith Hosp., London, W12 0HS, UK SO Br. J. Ind. Med. (1990), 47(7), 442-7 CODEN: BJIMAG; ISSN: 0007-1072 DT Journal LA English CC 59-2 (Air Pollution and Industrial Hygiene) Section cross-reference(s): 4 AB Blood Pb concn., measured in 398 male and 133 female London civil servants not subject to industrial exposure to heavy metals, ranged from 0.20 to 1.70 .mu.mol/L with a geometric mean concn. of 0.58 .mu.mol/L in men and 0.46 .mu.mol/L in women (p <0.001). In women blood Pb concn. increased with age. In both sexes blood Pb concn. was pos. correlated with the no. of cigarets smoked a day, with the reported no. of alc. beverages consumed a day, and with serum .gamma.-glutamyltranspeptidase. In men 14% of the variance of blood Pb concn. was explained by the significant and independent contributions of smoking and alc. intake and in women 16% by age, smoking, and alc. consumption. In men serum creatinine concn. increased by 0.6 .mu.mol/L for each 25% increment in blood Pb concn. In conclusion, in subjects not exposed to heavy metals at work, gender, age, smoking, and alc. intake are determinants of blood Pb concn. At a low level of exposure, Pb accumulation may slightly impair renal function, whereas blood pressure does not seem to be importantly influenced. Alternatively, a slight impairment of renal function may give rise to an increase in blood Pb concn. ST blood lead nonoccupational London England; tobacco smoking blood lead England; alc consumption blood lead England; creatinine blood lead blood England; kidney function lead blood England IT Blood pressure Tobacco smoke and smoking (blood lead levels in relation to, in nonoccupationally exposed men and women in London, England) IT Environmental pollution (by lead, blood lead levels in relation to, determinants of, in nonoccupationally exposed men and women in London, England) IT Alcoholic beverages (consumption of, blood lead levels in relation to, in nonoccupationally exposed men and women in London, England) IT Blood serum (creatinine in, blood lead levels in relation to, in nonoccupationally exposed men and women in London, England) IT Blood (lead concns. in, determinants of, in nonoccupationally exposed men and women in London, England) IT 64-17-5 RL: OCCU (Occurrence) (alcoholic beverages, consumption of, blood lead levels in relation to, in nonoccupationally exposed men and women in London, England) IT 64-17-5, Ethanol, biological studies RL: BIOL (Biological study) (consumption of, blood lead levels in relation to, in nonoccupationally exposed men and women in London, England) IT 60-27-5, Creatinine RL: ADV (Adverse effect, including toxicity); BIOL (Biological study) (in blood serum, blood lead levels in relation to, in nonoccupationally exposured men and women in London, England) IT 7439-92-1, Lead, biological studies RL: BIOL (Biological study) (in blood, of nonoccupationally exposed men and women, determinants of, in London, England) L4 ANSWER 10 OF 61 CA COPYRIGHT 1996 ACS AN 114:40646 CA TI Post-translational polymorphism of human IgA identified by immunoisoelectrofocusing AU De Benedictis, G.; ***Rose, G.*** ; Brancati, C. CS Dep. Cell Biol., Univ. Calabria, Arcavacata, 87030, Italy SO J. Immunogenet. (1990), 17(1-2), 43-50 CODEN: JIMGAV; ISSN: 0305-1811 DT Journal LA English CC 15-3 (Immunochemistry) AB Immunoisoelectrofocusing (IIEF) reveals a microheterogeneity of human serum IgA controlled by an autosomal polymorphic gene, termed S. The microheterogeneity disappears when sialic acid is removed from serum glycoproteins by neuraminidase treatment. Gene S might encode a sialyltransferase which attaches sialic acid at the outer prosthetic chain of IgA. ST IgA polymorphism gene S human IT Genetic polymorphism (in IgA oligosaccharide microheterogeneity, in humans, gene S in relation to) IT Sialic acids RL: BIOL (Biological study) (in IgA oligosaccharide polymorphism, in humans, gene S in relation to) IT Immunoglobulins RL: BIOL (Biological study) (A, oligosaccharide polymorphism of human, sialic acid and gene S in) IT Oligosaccharides RL: BIOL (Biological study) (sialo-, of IgA, polymorphism of human, gene S in) IT Gene and Genetic element, animal RL: BIOL (Biological study) (S, in IgA oligosaccharide polymorphism, in humans) IT 9075-81-4, Sialyltransferase RL: BIOL (Biological study) (in IgA oligosaccharide polymorphism in human) L4 ANSWER 11 OF 61 CA COPYRIGHT 1996 ACS AN 114:37352 CA TI Neurobehavioral and sensory irritant effects of controlled exposure to a complex mixture of volatile organic compounds AU Otto, D.; Molhave, L.; ***Rose, G.*** ; Hudnell, H. K.; House, D. CS Health Eff. Res. Lab., U. S. Environ. Prot. Agency, Research Triangle Park, NC, 27711, USA SO Neurotoxicol. Teratol. (1990), 12(6), 649-52 CODEN: NETEEC; ISSN: 0892-0362 DT Journal LA English CC 4-3 (Toxicology) Section cross-reference(s): 59 AB Subjective reactions of discomfort, impaired air quality, irritation of mucosal membranes, and impaired memory have been reported in chem. sensitive subjects during exposure to volatile org. compds. (VOCs) found in new buildings. Sixty-six normal healthy male subjects aged 18-39 were exposed for 2.75 h to a complex VOC mixt. at 0 and 25 mg/m3. Each subject completed control and exposure sessions at 1-wk intervals in counterbalanced order. Measurements included comfort ratings of eye, nose and throat irritation, symptom questionnaire and computerized behavioral tests. Subjects found the odor of VOCs unpleasantly strong and reported that VOC exposure degraded air quality, increased headache, and produced general discomfort. VOC exposure did not affect performance on any behavioral tests. ST volatile org compd behavior; air pollution indoor behavior irritant effect IT Volatile substances (org., irritant effect of, neurobehavioral response to, in humans) IT Behavior Learning Memory, biological Mental activity (volatile org. compds. effect on, in humans) IT Air pollution (indoor, from volatile org. compds., irritant effect of, neurobehavioral response to, in humans) IT 66-25-1, n-Hexanal 67-63-0, Isopropanol, biological studies 71-36-3, n-Butanol, biological studies 75-34-3, 1,1-Dichloroethane 78-93-3, 2-Butanone, biological studies 80-56-8, .alpha.-Pinene 95-63-6, 1,2,4-Trimethylbenzene 100-41-4, Ethylbenzene, biological studies 103-65-1, n-Propylbenzene 106-42-3, p-Xylene, biological studies 108-10-1, 4-Methyl-2-pentanone 110-54-3, n-Hexane, biological studies 110-62-3, n-Pentanal 110-82-7, Cyclohexane, biological studies 111-15-9 111-66-0, 1-Octene 111-84-2, n-Nonane 123-86-4, n-Butylacetate 124-18-5, n-Decane 872-05-9, 1-Decene 1120-21-4, n-Undecane RL: PRP (Properties) (irritant effect of, neurobehavioral response to, in humans) L4 ANSWER 12 OF 61 CA COPYRIGHT 1996 ACS AN 114:22860 CA TI Diagnostic nitrogen concentrations for cabbages grown in sand culture AU Huett, D. O.; ***Rose, G.*** CS Trop. Fruit Res. Stn., NSW Agric. Fish., Alstonville, 2477, Australia SO Aust. J. Exp. Agric. (1989), 29(6), 883-92 CODEN: AJEAEL; ISSN: 0816-1089 DT Journal LA English CC 19-1 (Fertilizers, Soils, and Plant Nutrition) AB The cabbage cv. Rampo was grown in sand culture with 5 nitrogen (N) levels, between 2 and 43 mmol/L, applied as nitrate each day in a complete nutrient soln. The youngest fully opened leaf (YFOL), which became the wrapper leaf at heading, the youngest fully expanded leaf (YFEL) and the oldest green leaf (OL) were harvested at a min. of 2-wk intervals over a 12-wk growth period. Std. lab. leaf total N and nitrate-N detns. and rapid petiole sap nitrate-N detns. were conducted on YFOL, YFEL, and OL. Total N was also detd. in bulked leaves. The relationship between growth rate relative to the max. at each sampling time and leaf N concn. was used to derive diagnostic petiole sap nitrate-N, leaf nitrate-N, and total N in YFOL, YFEL, and OL and bulked leaf total N concns. Crit. concn. corresponded to 90% max. growth rate and adequate concn. corresponded to 91-100% max. growth rate. Petiole sap nitrate-N concn., which can be measured rapidly in the field, and leaf nitrate-N concn. were very responsive to N application where pos. growth responses were recorded. Crit. N concns. are presented for all leaves at most sampling times throughout the growth period. Crit. total N concns. in YFOL, YFEL, and bulked leaves were higher during the pre-heading growth stage (weeks 2-6) than the post-heading growth stage (weeks 8-12). Crit. N concns. were inconsistent over the growth period and it was not possible to present single values to represent the full growth period, with 2 exceptions. A crit. petiole sap nitrate-N concn. for OL of 3.0 g/L can be recommended for the full growth period because it represents a percentage of max. growth rate range of 88-95%. Similarly, for YFEL, a crit. total N concn. of 4.10% pre-heading (range 4.10-4.38%) represents a percentage max. growth rate range of 62-90% and a post-heading crit. total N concn. of 3.10% (range 3.10-3.50%) represents a percentage max. growth rate range of 76-90%. The concns. of potassium, phosphorus, calcium, magnesium and sulfur in YFOL, YFEL, OL, and bulked leaf corresponding to N treatments producing max. growth rates are also presented. ST nitrogen cabbage leaf nutritional status detn IT Cabbage (nitrogen concn. in leaves of, nutritional status detn. by) IT Plant nutrition (nitrogen, status of, of cabbage, leaf anal. in detn. of) IT 7439-95-4, Magnesium, biological studies 7440-09-7, Potassium, biological studies 7440-70-2, Calcium, biological studies 7704-34-9, Sulfur, biological studies 7723-14-0, Phosphorus, biological studies RL: BIOL (Biological study) (in cabbage leaves, nitrogen treatments and nutritional status in relation to) IT 7727-37-9, Nitrogen, biological studies 14797-55-8, Nitrate, biological studies RL: BIOL (Biological study) (in cabbage leaves, nutritional status in relation to) IT 7727-37-9 RL: BIOL (Biological study) (plant nutrition, nitrogen, status of, of cabbage, leaf anal. in detn. of) L4 ANSWER 13 OF 61 CA COPYRIGHT 1996 ACS AN 110:215236 CA TI Drag reduction and rheological properties of cationic viscoelastic surfactant formulations AU ***Rose, G. D.*** ; Foster, K. L. CS Interfacial Sci. Funct. Polym. Lab., Dow Chem. Co., Midland, MI, 48674, USA SO J. Non-Newtonian Fluid Mech. (1989), 31(1), 59-85 CODEN: JNFMDI; ISSN: 0377-0257 DT Journal LA English CC 46-4 (Surface Active Agents and Detergents) AB The characteristic times obtained on an aq. soln. of 0.2 wt.% cetyltrimethylammonium salicylate (I) plus 0.2 wt.% Na salicylate (II) using steady shearing measurements increased with temp., in agreement with drag redn. activity (d). The effect of temp. on the crossover frequency also correlated well with d for 0.2 wt.% I aq. solns. at all levels of excess II up to 1.0 wt.%. However, no correlation was found between the amt. of excess II on the crossover frequency or magnitude of the storage modulus and d. The crit. shear stress at the wall obtained from the drag redn. data still seemed to be the best single parameter to characterize the d of viscoelastic surfactant formulations. ST drag redn surfactant viscoelasticity; cationic surfactant drag redn IT Viscoelastic materials (cationic surfactant formulations, drag redn. and rheol. properties of) IT Flow (drag redn. in, by viscoelastic cationic surfactant formulations) IT Surfactants (cationic, aq. solns. contg. sodium salicylate and, drag redn. activity of, viscoelasticity in relation to) IT Quaternary ammonium compounds, properties RL: USES (Uses) (trimethyltallow alkyl, salicylates, aq. solns. contg. sodium salicylate and, drag redn. activity of, viscoelasticity in relation to) IT 54-21-7, Sodium salicylate RL: USES (Uses) (aq. solns. contg. quaternary ammonium salicylates and, drag redn. activity of, viscoelasticity in relation to) IT 61482-44-8 88928-16-9 120681-98-3 120681-99-4 RL: USES (Uses) (aq. solns. contg. sodium salicylate and, drag redn. activity of, viscoelasticity in relation to) L4 ANSWER 14 OF 61 CA COPYRIGHT 1996 ACS AN 107:200409 CA TI Water-soluble hydrophobe association polymers AU Evani, S.; ***Rose, G. D.*** CS Cent. Res., Dow Chem. Co., Midland, MI, 48640, USA SO Polym. Mater. Sci. Eng. (1987), 57, 477-81 CODEN: PMSEDG; ISSN: 0743-0515 DT Journal; General Review LA English CC 42-0 (Coatings, Inks, and Related Products) Section cross-reference(s): 38, 51 AB A review with 29 refs. on the development of water-sol. hydrophobe assocn. polymer thickeners for control of latex paint rheol. and for enhanced oil recovery. ST associative thickener polymer review; rheol control coating thickener review; oil recovery polymer thickener review IT Thickening agents (associative water-sol., polymers, for coating rheol. control and enhanced oil recovery) IT Rheology (control of, of coatings, water-sol. associative polymer thickeners for) IT Polymers, uses and miscellaneous RL: USES (Uses) (thickeners, associative water-sol., for rheol. control) IT Petroleum recovery (thickening agents for, water-sol. hydrophobe associative polymers as) IT Coating materials (latex, water-sol. associative polymer thickeners for, for rhenol. control) L4 ANSWER 15 OF 61 CA COPYRIGHT 1996 ACS AN 106:136997 CA TI Immobilization of yeast cells in polyurethane ionomers AU Lorenz, O.; Haulena, F.; ***Rose, G.*** CS Fachhochsch. Aachen, Aachen, D-5100, Fed. Rep. Ger. SO Biotechnol. Bioeng. (1987), 29(3), 388-91 CODEN: BIBIAU; ISSN: 0006-3592 DT Journal LA English CC 16-9 (Fermentation and Bioindustrial Chemistry) AB Emulsifier-free aq. dispersions of amphiphilic polyurethane ionomers were used for the immobilization of yeast cells. By coagulation with a salt soln., mixts. of yeast cells and dispersion form hydrogels under entrapment of the biocatalyst. Water channels form the continuous phase of the hydrogels. As compared with other polymers used for immobilization of cells or enzymes, polyurethane ionomers offer certain advantages. (a) Immobilization is carried out after formation of the polymer, which is free of unreacted NCO groups; therefore, the polymer is nontoxic. (b) Caused by the comparatively low swelling in water, the beads show a high mech. stability. A further consequence of the low water swelling is the possibility of forming gels with a high cell concn. (c) The hydrophilicity of the ionomer can be varied within a broad range by the type and amt. of the ionic groups, the nature of the counterion, as well as the chem. structure of the macrodiol. ST yeast immobilization polyurethane ionomer; Saccharomyces immobilized urethane polymer IT Fermentation (ethanol, by yeast immobilized in polyurethane ionomers) IT Saccharomyces cerevisiae (immobilization of, in polyurethane ionomers) IT Immobilization, biochemical (of yeast, in polyurethane ionomers) IT Urethane polymers, biological studies RL: BIOL (Biological study) (ionomers, yeast immobilization in) IT 64-17-5P, Ethanol, preparation RL: BMF (Bioindustrial manufacture); BIOL (Biological study); PREP (Preparation) (manuf. of, by yeast immobilized in polyurethane ionomers) L4 ANSWER 16 OF 61 CA COPYRIGHT 1996 ACS AN 106:121613 CA TI The colloidal behavior of Kraft lignin and lignosulfonates AU Nyman, Veronika; ***Rose, G.*** ; Ralston, J. CS Dep. Appl. Chem., Swinburne Inst. Technol., Hawthorn, 3122, Australia SO Colloids Surf. (1986), 21, 125-47 CODEN: COSUD3; ISSN: 0166-6622 DT Journal LA English CC 43-5 (Cellulose, Lignin, Paper, and Other Wood Products) AB Pinus radiata Kraft lignin [8068-05-1] (PKL), Eucalyptus regnans kraft lignin (EKL) and Eucalyptus regnans NSSC lignosulfonic acid [8062-15-5] (LSA) were isolated and purified. The PKL and LSA samples were fractionated by gel permeation chromatog. and their mol. wts. verified by light scattering. Mol. wts. ranged from 104 to 2.5 .times. 105. Coagulation studies of these lignins, as well as 2 com. products (Indulin AT and Ufoxane 3A [8061-51-6]), performed in the presence of salt indicated that the lignins behave as colloids which are sterically stabilized, particularly at high pH. Lignin specifically adsorbed onto solid Ca(OH)2 at pH 12.2 and reversed the sign of the zeta potential. PKL, EKL, Indulin AT and LSA were potentiometrically titrated. The variation of apparent dissocn. const. with degree of dissocn. was markedly different from that of classic polyelectrolytes. Aggregation effects occurred at low .alpha., and surface chain extension and ionization at high .alpha.. Most of the lignins had an intrinsic dissocn. const. (pK0) equiv. to that of a carboxyl group. Free energy data and pK0 varied with ionic strength in a manner which reflects the different chem. structures of the 2 main classes of lignin. ST kraft lignin colloidal property; lignosulfonic acid colloidal property; dissocn kraft lignin lignosulfonic acid; zeta potential kraft lignin lignosulfonic acid IT Electrokinetic potential (of kraft lignin from pine and eucalyptus and lignosulfonic acid, colloidal properties in relation to) IT 8061-51-6 RL: PRP (Properties) (colloidal properties of, as model for kraft lignin from pine and eucalyptus wood) IT 8062-15-5, Lignosulfonic acid RL: PRP (Properties) (colloidal properties of, from eucalyptus) IT 8068-05-1, Kraft lignin RL: PRP (Properties) (colloidal properties of, from pine and eucalyptus) L4 ANSWER 17 OF 61 CA COPYRIGHT 1996 ACS AN 105:112707 CA TI Human polymorphic APO-LDL investigated by high-resolution two-dimensional electrophoresis AU De Benedictis, G.; Di Maio, E.; ***Rose, G.*** ; Renis, M.; Brancati, C.; Tagarelli, A. CS Dep. Cell Biol., Univ. Calabria, Arcavacata, 87030, Italy SO Exp. Clin. Immunogenet. (1986), 3(2), 75-80 CODEN: ECIME4 DT Journal LA English CC 13-4 (Mammalian Biochemistry) AB The apolipoprotein (APO) part of a human polymorphic low-d.-lipoprotein (LDL) was investigated by 2-dimensional electrophoresis. Since these allotypic LDLs were purified from sera by specific immunochromatog., data are given for only 1 mol. species of LDL. The 2-dimensional electrophoresis revealed the presence of isoforms which were correlated to the serol. phenotype. A hypothesis about APO-LDL gene organization is outlined. ST apolipoprotein polymorphism phenotype IT Genetics (of apolipoproteins, of blood serum of humans) IT Lipoproteins RL: PRP (Properties) (low-d. apo-, polymorphism of, of blood serum of humans) L4 ANSWER 18 OF 61 CA COPYRIGHT 1996 ACS AN 103:172024 CA TI Dopaminergic neurotoxicity of 1-methyl-4-phenyl-1,2,3,6- tetrahydropyridine (MPTP) in the mouse: an in vivo electrochemical study AU Gerhardt, G.; ***Rose, G.*** ; Stroemberg, I.; Conboy, G.; Olson, L.; Jonsson, G.; Hoffer, B. CS Health Sci. Cent., Univ. Colorado, Denver, CO, USA SO J. Pharmacol. Exp. Ther. (1985), 235(1), 259-65 CODEN: JPETAB; ISSN: 0022-3565 DT Journal LA English CC 1-11 (Pharmacology) AB The long-term (i.e., 4-5 mo) effects of large doses (3 .times. 50 mg/kg) of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) [28289-54-5] on striatal dopamine [51-61-6]-contg. afferents were studied in mice. There was a decrease in the av. K+-evoked release of electroactive species from the MPTP-treated mouse caudate nucleus vs. control. Greater decreases in release were seen in dorsal than in ventral striatum. The av. rise time of K+-evoked release was also prolonged after MPTP pretreatment. Histochem. studies showed an overall redn. in the d. of dopamine-contg. terminals in the drug-treated mice, with a greater loss obsd. in the more dorsal regions of the caudate nucleus. The exptl. data thus support a long-term selective destruction of dorsal vs. ventral dopamine-contg. afferents to the striatum by the neurotoxin MPTP in mice. ST methylphenyltetrahydropyridine dopaminergic neuron toxicity brain IT Nervous system (central, dopaminergic, methylphenyltetrahydropyridine toxicity to) IT Brain, toxic chemical and physical damage (striatum, methylphenyltetrahydropyridine toxicity to, dopaminergic neuron in) IT 51-61-6, biological studies RL: BIOL (Biological study) (brain striatum neurons contg., methylphenyltetrahydropyridine- induced toxicity to) IT 28289-54-5 RL: PRP (Properties) (toxicity of, to dopaminergic neurons of brain striatum) L4 ANSWER 19 OF 61 CA COPYRIGHT 1996 ACS AN 103:116908 CA TI Monoamine release from dopamine-depleted rat caudate nucleus reinnervated by substantia nigra transplants: an in vivo electrochemical study AU ***Rose, G.*** ; Gerhardt, G.; Stroemberg, I.; Olson, L.; Hoffer, B. CS Health Sci. Cent., Univ. Colorado, Denver, CO, 80262, USA SO Brain Res. (1985), 341(1), 92-100 CODEN: BRREAP; ISSN: 0006-8993 DT Journal LA English CC 2-8 (Mammalian Hormones) AB In vivo electrochem. was used to analyze the magnitude, time course, and spatial distribution of neurotransmitter releases evoked by local application of K+ from dopamine (DA) [51-61-6]-depleted, fetal substantial nigra (SN) transplant-reinnervated striatum. Animals were injected unilaterally with 6-hydroxydopamine (6-OHDA) into the SN and screened by measuring apomorphine [58-00-4]-induced rotation. Some were then given SN grafts, which were placed in a delayed cavity just dorsal to the lesioned striatum. Nafion-coated graphite epoxy capillary (GEC) electrodes were employed for the electrochem. to minimize signals derived from ascorbate or acidic DA metabolites. The GEC electrode was fixed to a K+-filled micropipette and this assembly was used to map the caudate nucleus of control, 6-OHDA-treated, and 6-OHDA-treated, grafted animals. The morphometric relations between striatal recording sites and transplant location were subsequently verified histol. Release from striatals sites within 1.0 mm of the SN grafts were slightly, but not significantly, less than those obtained from control caudate. By contrast, releases from striatal sites further distal from transplants were markedly reduced to .apprx.30% of control; similar values were obtained from 6-OHDA-treated striata which did not received SN grafts. The time course of the K+-evoked releases was also reduced following -OHDA treatment, but returned to control values in striatal sites proximal to a transplant. Apparently SN grafts ameliorate lesion-induced behavioral dysfunctions by providing specific DA input to the host brain. ST monoamine brain dopamine depletion transplant; behavior brain dopamine depletion transplant IT Transplant and Transplantation, animal (of brain substantia nigra, momoamine release by striatum response to, after dopamine depletion) IT Nerve (dopaminergic, brain striatum innervation by, from substantia nigra transplant) IT Embryo (fetus, monoamine release by dopamine-depleted striatum response to substantia nigra transplant from) IT Amines, biological studies RL: BIOL (Biological study) (mono-, release of, by brain striatum after dopamine depletion, substantia nigra transplant effect on) IT Brain, metabolism (striatum, monoamine release by, after dopamine depletion, substantia nigra transplant effect on) IT Brain (substantia nigra, monoamine release by dopamine-depleted striatum response to transplant of) IT 51-61-6, biological studies RL: BIOL (Biological study) (depletion of, in brain striatum, monoamine release response to, substantia nigra transplant effect on) IT 7440-09-7, biological studies RL: BIOL (Biological study) (monoamine release stimulation by, in brain striatum after dopamine depletion, substantia nigra transplant effect on) IT 58-00-4 RL: BIOL (Biological study) (rotational behavior response to, in dopamine depletion of striatum, substantia nigra transplant effect on) L4 ANSWER 20 OF 61 CA COPYRIGHT 1996 ACS AN 102:129441 CA TI Sequential changes in red cell glycolytic enzymes and intermediates and possible control mechanisms in the first two months of postnatal life in lambs AU Travis, S. F.; Wagerle, L. C.; De Alvarado, C. M.; ***Rose, G.*** ; Delivoria-Papadopoulos, M. CS Jefferson Med. Coll., Thomas Jefferson Univ., Philadelphia, PA, 19107, USA SO Pediatr. Res. (1985), 19(3), 272-7 CODEN: PEREBL; ISSN: 0031-3998 DT Journal LA English CC 13-3 (Mammalian Biochemistry) AB The sequential changes in several red blood cell glycolytic enzymes, glucose 6-phosphate dehydrogenase, glycolytic intermediates, and ATP, as well as intracellular pH and plasma inorg. P, were followed simultaneously in lambs from birth to 2 mo of age. The activities of all glycolytic enzymes and glucose 6-phosphate dehydrogenase were elevated at birth. The 2,3-DPG concn. increased markedly postnatally and was assocd. with a simultaneous increase in the concns. of red cell glucose 6-phosphate and total triose phosphate and a decrease in intracellular pH. Inorg. P also increased and correlated with the 2,3-DPG concn. in the 1st 10 days of postnatal life. The content of red cell 3-phosphoglycerate, 2-phosphoglycerate, phosphoenolpyruvate, and ATP increased slightly. These results suggested increased glycolytic flux through the diphosphoglycerate mutase reaction which resulted in net synthesis of 2,3-DPG. The red cell total triose phosphate peaked and fell initially, followed by glucose 6-phosphate and 2,3-DPG, suggesting inhibition of phosphofructokinase activity and a decrease in glycolysis secondary to decreased red cell intracellular pH. After 10 days of postnatal life, all glycolytic intermediates fell simultaneously, which correlated with a decrease in activity of the glycolytic enzymes. ST erythrocyte glycolysis newborn sheep; enzyme glycolysis newborn sheep erythrocyte; development erythrocyte glycolysis sheep IT Glycolysis (by erythrocytes, of newborn sheep, regulatory mechanisms in relation to) IT Sheep (glycolysis by erythrocytes of newborn of) IT Development, mammalian (glycolysis by erythrocytes of sheep in) IT Newborn (glycolysis by erythrocytes of, of sheep) IT Erythrocyte (glycolytic enzymes and intermediates of, of newborn sheep, regulatory mechanisms in relation to) IT Acid-base equilibrium (of erythrocytes, of newborn sheep) IT Blood plasma (phosphorus of, of newborn sheep) IT Enzymes RL: BIOL (Biological study) (glycolytic, of erythrocytes of newborn sheep) IT Carbohydrates and Sugars, esters RL: BIOL (Biological study) (trioses, phosphates, of erythrocytes of newborn sheep) IT 7723-14-0, biological studies RL: BIOL (Biological study) (of blood plasma, of newborn sheep) IT 56-73-5 138-08-9 138-81-8 643-13-0 820-11-1 9001-40-5 9001-51-8 9001-59-6 9001-80-3 9001-83-6 9014-08-8 9023-91-0 9024-52-6 25535-59-5 RL: BIOL (Biological study) (of erythrocytes, of newborn sheep) L4 ANSWER 21 OF 61 CA COPYRIGHT 1996 ACS AN 102:83585 CA TI Centralized mining environment monitoring system CGA AU Boutonnat, M.; Marget, C.; ***Rose, G.*** CS Fr. SO Ind. Miner., Tech. (1984), (7), 592-8 CODEN: INMTDT; ISSN: 0240-9542 DT Journal LA French CC 59-1 (Air Pollution and Industrial Hygiene) Section cross-reference(s): 51, 79 AB A centralized system for monitoring air quality in mines (e.g., firedamp levels in ventilation and degassing pipes, air speed, CO and CO2 levels, temp.) is based on an above-ground microcomputer connected to surface modems, subsurface modems, and subsurface samplers through telemetric long lines. All air quality data is centralized and visualized on the surface using printers, graphical printers, etc. The monitoring system is designed to run independently of mining operations. The structure of the system is modular and adaptable. Good results were obtained from exptl. use of the system at a coal mining office in Lorraine in Oct., 1982. ST mining air quality monitoring microcomputer; coal mine environment monitoring microcomputer IT Computer application (in centralized air quality monitoring system in mines) IT Air analysis (in mines, centralized computerized system for) IT Firedamp (monitoring of, in coal mines, centralized computer system for) IT Mines and Mining (coal, air quality monitoring in, centralized computer system for) IT 74-82-8, analysis 630-08-0, analysis RL: ANST (Analytical study) (monitoring of, in coal mine air, centralized system for) L4 ANSWER 22 OF 61 CA COPYRIGHT 1996 ACS AN 101:94149 CA TI Fundamental studies on coal gasification mechanisms AU Zabransky, R. F.; Stock, L. M.; ***Rose, G.*** CS Inst. Gas Technol., Chicago, IL, USA SO Report (1983), GRI-81/0198; Order No. PB84-148063, 41 pp. Avail.: NTIS From: Gov. Rep. Announce. Index (U. S.) 1984, 84(7), 204 DT Report LA English CC 51-20 (Fossil Fuels, Derivatives, and Related Products) AB Data on the pyrolytic reactivity of structural elements in coal were obtained by converting Illinois No. 6 coal into O- and C-alkylated coals, some contg. 13C and D labels including the O-Me, O-benzyl, O-benzyl-d7, O-benzyl-1-13C, C-benzyl-d7, and C-benzyl-1-13C derivs. The modified coals are more reactive than the unmodified, which suggests that the extent of small-fragment-mol. formation depends in a direct way upon the concn. of radicals within the coal particles. The exchange patterns suggest that the energetically more favorable reactions occur reversibly, and that the radical-addn. and recombination reactions compete favorably with fragmentation and radical-substitution reactions. The nonrandom distribution of the isotopic labels in the products indicates that the reactions within the coal particles are kinetically controlled, even at >850.degree.. ST coal gasification mechanism alkylation; radical coal gasification alkylation; kinetics coal gasification isotope; pyrolysis coal gasification IT Radicals, reactions RL: RCT (Reactant) (in pyrolytic coal gasification) IT Thermal decomposition (mechanism of, in coal gasification) IT Benzylation Methylation (of coal, coal-gasification mechanism in relation to) IT Coal gasification (pyrolysis, radical reactions in) L4 ANSWER 23 OF 61 CA COPYRIGHT 1996 ACS AN 101:91525 CA TI Isocyanato prepolymers of diisocyanates containing differently reactive NCO-groups AU Lorenz, O.; Decker, H.; ***Rose, G.*** CS Fachhochsch. Aachen, Aachen, D-5100, Fed. Rep. Ger. SO Angew. Makromol. Chem. (1984), 122, 83-99 CODEN: ANMCBO; ISSN: 0003-3146 DT Journal LA German CC 35-3 (Chemistry of Synthetic High Polymers) Section cross-reference(s): 22, 67 AB Two methods are described for detg. the ratio (.gamma.) of the rate consts. for urethane formation by isocyanates having 2 NCO groups of differing reactivity. In the reaction of hexamethylene diisocyanate [822-06-0] or isophorone diisocyanate [4098-71-9] with excess BuOH [71-36-3], the consumption of both NCO groups follows 1st-order kinetics. The .gamma. so detd. is 1.0 and 5.1-4.4, resp., at 40-65.degree.. In the reaction of excess diisocyanate with macrodiols, e.g. polytetramethylene glycol [25190-06-1], .gamma. can be estd. from NCO consumption provided that when .gamma. is not 1, the reaction is 1st-order for both NCO groups. Under these conditions, and knowing .gamma., product compn., diisocyanates singly or doubly bonded, and the type of NCO end groups on prepolymers can be calcd. ST isocyanate reactivity ratio diisocyanate; hexamethylene diisocyanate reactivity ratio; isophorone diisocyanate reactivity ratio; butanol reaction diisocyanate kinetics; polytetramethylene glycol reaction diisocyanate; kinetics reaction alc diisocyanate; polyurethane compn diisocyanate reactivity IT Urethane polymers, properties RL: PRP (Properties) (compn. of, diisocyanate reactivity ratio in relation to) IT Kinetics of polymerization (of diisocyanates with polymeric diols, isocyanate group reactivity ratio in relation to) IT Kinetics of esterification (of diisocyanates, isocyanate group reactivity ratio in relation to) IT 822-06-0 4098-71-9 RL: RCT (Reactant) (reaction of, with alcs., isocyanate group reactivity ratio in) IT 71-36-3, reactions 25190-06-1 RL: RCT (Reactant) (reaction of, with diisocyanates, isocyanate group reactivity ratio in) L4 ANSWER 24 OF 61 CA COPYRIGHT 1996 ACS AN 100:104292 CA TI Separation of PUR-ionomers with sulfonate groups and nonionic prepolymers using gel-permeation chromatography AU Lorenz, O.; ***Rose, G.*** CS Fachbereich 3, Fachhochsch. Aachen, Aachen, Fed. Rep. Ger. SO Angew. Makromol. Chem. (1983), 118, 91-104 CODEN: ANMCBO; ISSN: 0003-3146 DT Journal LA German CC 37-3 (Plastics Manufacture and Processing) AB Ionomers were prepd. by the reaction of prepolymers (prepd. from polypropylene glycol or polytetramethylene glycol and hexamethylene or isophorone diisocyanates and purified by thin-film distn.) with H2NCH2CH2NHCH2CH2SO3Na in varying amts. Sepn. of the products by gel permeation chromatog. using .mu.-Bondagel packing and aq. eluants gave ionomer-prepolymer compns. identical with those calcd. for most probable mol. wt. distributions. ST polyurethane ionomer gel chromatog; sulfoethylethylenediamine polyurethane; ethylenediamine sulfoethyl polyurethane; polyether polyurethane ionomeric IT Urethane polymers, properties RL: USES (Uses) (ionomers, sepn. from nonionic, by gel chromatog.) IT Ionomers RL: USES (Uses) (polyurethanes, sepn. from nonionic, by gel chromatog.) IT 9048-90-2D, reaction products with [(aminoethyl)amino]ethanesulfonat e 9082-83-1D, reaction products with [(aminoethyl)amino]ethanesulf onate 34730-59-1D, reaction products with polyurethanes 39378-01-3D, reaction products with [(aminoethyl)amino]ethanesulfona te RL: PROC (Process) (gel chromatog. of) L4 ANSWER 25 OF 61 CA COPYRIGHT 1996 ACS AN 98:90339 CA TI Polyurethane ionomers from isocyanate prepolymers purified by thin-film distillation AU Lorenz, O.; ***Rose, G.*** CS Lab. Makromol. Chem., Fachhochsch., Aachen, D-5100, Fed. Rep. Ger. SO Colloid Polym. Sci. (1982), 260(12), 1079-82 CODEN: CPMSB6; ISSN: 0303-402X DT Journal LA German CC 37-3 (Plastics Manufacture and Processing) AB NCO-contg. prepolymers were prepd. from 2021 g polytetramethylene glycol (Teracol 2000) and 289.6 g hexamethylene diisocyanate (I) at 110.degree. and subjected to thin-film distn. to reduce the content of free I from 2.4 to 1.1%. The prepolymers were chain extended with H2NCH2CH2NHCH2CH2SO3Na and converted to anionic polyurethane [80164-54-1] dispersions from acetone soln. The polydispersity and av. particle size of the dispersion were decreased by decreasing the amt. of free I. ST polyurethane anionic latex; sulfonate aminoethyl polyurethane; ethylenediamine sulfonate deriv polyurethane; distn thin film polyurethane; particle size polyurethane latex; polydispersity polyurethane latex IT Urethane polymers, preparation RL: SPN (Synthetic preparation); PREP (Preparation) (latexes, prepolymer purifn. in prepn. of, particle size and polydispersity in relation to) IT Particle size (of polyurethane latexes, prepolymer purifn. effect on) IT 80164-54-1 RL: USES (Uses) (latexes, particle size and polydispersity of, prepolymer purifn. effect on) L4 ANSWER 26 OF 61 CA COPYRIGHT 1996 ACS AN 96:200611 CA TI Determination of strong acid near weak acid in polyurethane dispersions with sulfonate and carboxylate groups AU Lorenz, O.; Breidenich, N.; Denter, U.; Reinmoeller, K. H.; ***Rose, G.*** CS Lab. Makromol. Chem., Fachhochsch. Aachen, Aachen, Fed. Rep. Ger. SO Angew. Makromol. Chem. (1982), 103, 159-85 CODEN: ANMCBO; ISSN: 0003-3146 DT Journal LA German CC 37-1 (Plastics Manufacture and Processing) AB Dispersions of polyurethanes contg. varying amts. of SO3- and/or CO2- groups are prepd. by the reaction of polytetramethylene ether glycol (I) or a I-trimellitic anhydride copolymer with OCN(CH2)6NCO followed by chain extension with 2,2-dimethylolpropionic acid triethylamine salt and/or H(NHCH2CH2)2SO3Na. The dispersions are analyzed for strong and weak acid groups after cation exchange against H+ or Ag+ by conductometric and potentiometric titrns. While the conductometric titrn. of Ag+ ions with NaCl represents a very reliable method for the detn. of the sum of strong and weak acid, the endpoints during neutralization with NaOH are often incorrect or difficult to evaluate. However, the conductometric neutralization in the presence of a salt (KBr) distinguishes quant. between strong and weak acid, as the acid strength of the SO3- groups increases by addn. of the salt. The replacement of CO2- groups in a salt by conductometric titrn. with a strong acid, such as HCl, represents a method for detg. the weak acid. Polyelectrolytes formed as by-products can be analyzed in the serum by these methods after coagulation of the dispersed particles by freezing. The sepn. of polyelectrolytes with CO2- groups by anion exchange does not proceed quant. contrary to those with SO3- groups. ST polyurethane ionomer detn dispersion; carboxy group detn polyurethane; sulfo group detn polyurethane; conductometry detn polyurethane ionomer; potentiometry detn polyurethane ionomer IT Urethane polymers, analysis RL: PRP (Properties) (detn. of strong and weak acid groups in, by conductometric and potentiometric titrn.) IT Titration (conductometric, of polyurethanes contg. strong and weak acid groups) IT Ionomers RL: PRP (Properties) (polyurethanes, detn. of strong and weak acid groups in, by conductometric and potentiometric titrn.) IT Titration (potentiometric, of polyurethanes contg. strong and weak acid groups) IT 80164-54-1 81766-89-4 RL: PRP (Properties) (detn. of acid groups in, by conductometric and potentiometric titrn.) IT 81766-91-8 81830-17-3 RL: PRP (Properties) (detn. of strong and weak acid groups in, by conductometric and potentiometric titrn.) L4 ANSWER 27 OF 61 CA COPYRIGHT 1996 ACS AN 95:151587 CA TI Effect of water-soluble polyelectrolytes from 1,6-hexamethylene diisocyanate and sodium N-(2-aminoethyl)-2-aminoethanesulfonate on the dispersion formation by anionic polyurethanes AU Lorenz, O.; ***Rose, G.*** CS Lab. Makromol. Chem., Fachhochsch. Aachen, Aachen, 5100, Fed. Rep. Ger. SO Colloid Polym. Sci. (1981), 259(6), 587-95 CODEN: CPMSB6; ISSN: 0303-402X DT Journal LA German CC 36-6 (Plastics Manufacture and Processing) AB Solns. of polyelectrolytes prepd. by treating 1 or 2 mol 1,6-hexamethylene diisocyanate (I) with 1 mol Na N-(2-aminoethyl)-2-aminoethanesulfonate (II) were added to acetone solns. of an anionic polyurethane [65328-15-6] (prepd. from I, II, and an adipic acid-2,2-dimethyl-1,3-propanediol-1,6-hexanediol copolymer) before formation of an aq. dispersion. Continuous cond. measurements during dispersion showed that above a certain water concn. the cond. decreased with increasing amt. of polyelectrolyte. This was attributed to a partially reversible assocn. of particles with inclusion of water between the assocd. particles. The mean particle diam. increased with increasing polyelectrolyte content. The assocn. of particles became largely irreversible above a crit. concn. of polyelectrolyte, preventing the formation of stable dispersions. ST polyelectrolyte dispersion formation polyurethane; hexamethylene diisocyanate copolymer polyelectrolyte; aminoethanesulfonate copolymer polyelectrolyte IT Urethane polymers, properties RL: PRP (Properties) (anionic, dispersion formation by, polyelectrolyte effect on) IT Dispersion (of anionic urethane polymers in water, polyelectrolyte effect on) IT 65328-15-6 RL: USES (Uses) (dispersion formation by, polyelectrolyte effect on) IT 63532-93-4 RL: USES (Uses) (dispersion formation of anionic polyurethanes in presence of) L4 ANSWER 28 OF 61 CA COPYRIGHT 1996 ACS AN 95:148679 CA TI Degradation of steroids by microorganisms. XVII. 11.beta.- and 12.beta.-hydroxylation of (20S)-20-carboxy-1,4-pregnadien-3-one by Cochliobolus lunatus AU Hoerhold, C.; ***Rose, G.*** ; Kaufmann, G. CS Forschungszent. Molekularbiol. Med., DAW, Jena, DDR-69, Ger. Dem. Rep. SO Z. Allg. Mikrobiol. (1981), 21(4), 289-93 CODEN: ZAPOAK; ISSN: 0044-2208 DT Journal LA German CC 16-5 (Fermentations) Section cross-reference(s): 32 AB 11.beta.- [75220-09-6] And 12.beta.-hydroxy-(20S)-20-carboxy-1,4- pregnadien-3-one [78962-23-9] were produced in 20 and 13% yield, resp., from (20S)-20-carboxy-1,4-pregnadien-3-one [71154-85-3] by C. lunatus. The use of microbial metabolites of the 20-carboxypregnane type for the partial synthesis of glucocorticosteroid is discussed. ST steroid hydroxylation Cochliobolus IT Hydroxylation (11.beta.- and 12.beta.-, of carboxypregnadienone by Cochliobolus lunatus) IT Cochliobolus lunatus (carboxypregnadienone hydroxylation by) IT 71154-85-3 RL: RCT (Reactant) (hydroxylation of, by Cochliobolus lunatus) IT 75220-09-6P 78962-23-9P RL: PREP (Preparation) (prepn. of, with Cochliobolus lunatus) L4 ANSWER 29 OF 61 CA COPYRIGHT 1996 ACS AN 95:4163 CA TI Selective uptake and anterograde transport of horseradish peroxidase by hippocampal granule cells AU Erzurumlu, R. S.; ***Rose, G.*** ; Lynch, G. S.; Killackey, H. P. CS Sch. Social Sci., Univ. California, Irvine, CA, 92717, USA SO Neuroscience (1981), 6(5), 897-902 CODEN: NRSCDN; ISSN: 0306-4522 DT Journal LA English CC 13-2 (Mammalian Biochemistry) AB Introduction of horseradish peroxidase into the ventriculocisternal system results in selective labeling of the granule cells of the dentate gyrus and their axons, the mossy fibers. This labeling pattern is not seen after direct injections of horseradish peroxidase into the dorsal hippocampus. The d. of the granule cell labeling appears to be related to their proximity to the site of highest horseradish peroxidase concn. The combined distribution of horseradish peroxidase in the granule cells and mossy fibers strongly suggests that the latter element is labeled as the result of anterograde transport of horseradish peroxidase taken up by the granule cell perikarya or dendrites. This labeling was found in the absence of injury to the hippocampus, suggesting that neuronal damage is not necessary for anterograde transport horseradish peroxidase to occur. ST peroxidase axonal transport hippocampus; brain peroxidase axonal transport IT Brain, metabolism (axon, peroxidase axonal transport by, of hippocampus) IT Brain, metabolism (hippocampus, peroxidase axonal transport by) IT 9003-99-0 RL: PROC (Process) (axonal transport of, by hippocampus) L4 ANSWER 30 OF 61 CA COPYRIGHT 1996 ACS AN 94:186891 CA TI Modular assembly of proteins AU Wetlaufer, D. B.; ***Rose, G. D.*** CS Dep. Chem., Univ. Delaware, Newark, DE, USA SO Biomol. Struct., Conform., Funct., Evol., Proc. Int. Symp. (1981), Meeting Date 1978, Volume 2, 97-101. Editor(s): Srinivasan, Ramachandran; Subramanian, E.; Yathindra, N. Publisher: Pergamon, Oxford, Engl. CODEN: 45JXAX DT Conference; General Review LA English CC 6-0 (General Biochemistry) AB A review and discussion with 18 refs. ST review protein modular assembly IT Chains, chemical (folding of, of proteins) IT Proteins RL: BIOL (Biological study) (modular assembly of) L4 ANSWER 31 OF 61 CA COPYRIGHT 1996 ACS AN 92:133620 CA TI Corrosion behavior of cast nickel aluminum bronze in sea water AU Culpan, E. A.; ***Rose, G.*** CS Admir. Underwater Weapons Establ., Portland/Dorset, Engl. SO Br. Corros. J. (1979), 14(3), 160-6 CODEN: BCRJA3; ISSN: 0007-0599 DT Journal LA English CC 56-8 (Nonferrous Metals and Alloys) AB Sea water corrosion of cast, heat-treated, and welded bronze [73134-99-3] contg. Al 9.5, Ni 4.7, Fe 4.3, and Mn 1% was followed by optical and electron microscopy. Selective phase corrosion occurred near the weld heat-affected zone due to attack of the .alpha.-phase adjacent the continuous lamellar .kappa.-phase. Heat treatment considerably decreased the corrosion susceptibility due to stress relief, dispersal of the .kappa.-phase, and pptn. of finely dispersed cathodic phases within the .alpha.-matrix. ST bronze microstructure corrosion seawater; weld bronze seawater corrosion IT Welds (bronze, corrosion of, in seawater) IT 73134-99-3 RL: USES (Uses) (corrosion of cast, in seawater, microstructure effect on) L4 ANSWER 32 OF 61 CA COPYRIGHT 1996 ACS AN 92:132435 CA TI Results of conductivity, ion mobility and ion concentration measurements obtained with a parachuted Gerdien aspiration analyzer probe in heights below 70 km AU Widdel, H. U.; ***Rose, G.*** ; Borchers, R. CS Max-Planck-Inst. Aeron., Katlenburg-Lindau, D-3411/3, Fed. Rep. Ger. SO J. Atmos. Terr. Phys. (1979), 41(10-11), 1141-7 CODEN: JATPA3; ISSN: 0021-9169 DT Journal LA English CC 53-10 (Mineralogical and Geological Chemistry) AB The results of cond., ion mobility, and ion cond. measurements performed below 70 km with a parachuted Gerdien aspiration analyzer during winter and in the summer season are described. The mobility of the most abundant species of pos. ions was the same for summer and winter conditions. Obsd. increases of cond. are caused by increased carrier d. Increases of neg. cond. in heights above 40 km found in the winter seasons were probably caused by an increase of the no. d. of free electrons. A direct linear relation between the no. d. of charged carriers and the air temp. was not found. Suggestions are made for the cause of the obsd. seasonal variation in ion d. and in .lambda., the ratio of neg. ions to electrons. ST atm ion cond concn detn IT Atmosphere (cond. and ion mobility and ion concn. measurements in) L4 ANSWER 33 OF 61 CA COPYRIGHT 1996 ACS AN 92:104947 CA TI Steroid converting enzyme from microorganisms. XIII. Relation between steroid structure and induction of 4-ene-3- oxosteroid:(acceptor)-1-ene-oxidoreductase in Nocradia opaca AU Hoerhold, C.; Hueller, E.; ***Rose, G.*** CS Zentralinst. Mikrobiol. Exp. Ther., DAW, Jena, Ger. Dem. Rep. SO Z. Allg. Mikrobiol. (1980), 20(1), 23-32 CODEN: ZAPOAK; ISSN: 0044-2208 DT Journal LA German CC 3-2 (Biochemical Interactions) AB Induction of the title enzyme in N. opaca by steroids was dependent on both hydrophobic and hydrophilic characteristics of the inducer mol., being influenced, for example, by the presence of oxygen functions and Me groups on the inducer. Another factor that must be considered results from the degrdn. of the steroid during the period of enzyme induction. ST steroid dehydrogenase induction; Nocardia steroid dehydrogenase induction IT Nocardia opaca (steroid dehydrogenase formation by, steroid induction of) IT Molecular structure-biological activity relationship (steroid dehydrogenase-inducing, of steroids) IT 9029-04-3 RL: FORM (Formation, nonpreparative) (formation of, by Nocardia opaca, steroid induction of) IT 50-23-7 50-24-8 50-28-2, biological studies 52-76-6 53-03-2 53-06-5 57-63-6 57-83-0, biological studies 58-18-4 58-22-0 63-05-8 64-85-7 68-96-2 72-63-9 152-58-9 302-22-7 434-22-0 566-35-8 1093-58-9 1164-81-4 2446-23-3 5785-58-0 19590-23-9 20592-45-4 24284-83-1 43085-16-1 56102-66-0 63795-53-9 63795-83-5 63795-84-6 65928-56-5 RL: PRP (Properties) (steroid dehydrogenase induction by, in Nocardia opaca) L4 ANSWER 34 OF 61 CA COPYRIGHT 1996 ACS AN 92:36860 CA TI Steroid converting enzymes from microorganisms. XII. Characteristics of the induction of 4-en-3-oxosteroid: (acceptor)-1-en-oxidoreductase in Nocardia opaca AU Hoerhold, C.; Hueller, E.; ***Rose, G.*** CS Zentralinst. Mikrobiol. Exp. Ther., DAW, Jena, DDR 69, Ger. Dem. Rep. SO Z. Allg. Mikrobiol. (1979), 19(10), 731-9 CODEN: ZAPOAK; ISSN: 0044-2208 DT Journal LA German CC 7-13 (Enzymes) Section cross-reference(s): 10 AB 17.alpha.-Methyltestosterone (I) and the corresponding 1(2)-dehydro compd., Dianabol, were efficient inducers of the 4-en-3-oxosteroid-acceptor 1-en-oxidoreductase (EC 1.3.99.4) (II) of N. opaca. After a 4 h lag period, II activity increased, reaching an optimum value between 8 and 12 h and then decreasing to its original value by 48 h. The steroids were completely metabolized after 12 h, corresponding to the drop in II activity. The optimum I concn. for induction was 0.3-0.4 mg/mL, higher concns. causing reduced II activity. The optimum temp. for induction by 0.4 mg/mL I was between 25 and 31.5.degree.; at 34.degree., the activity sharply decreased and at 37.degree. it was undetectable. Chloramphenicol and streptomycin were powerful inhibitors of the induction process, causing 85% inhibition at a concn. of 8 .mu.M. ST steroid dehydrogenase Nocardia induction methyltestosterone; Dianabol induction steroid dehydrogenase Nocardia IT Nocardia opaca (oxosteroid .DELTA.1-dehydrogenase of, induction of, by methyltestosterone and Dianabol) IT 9029-04-3 RL: BIOL (Biological study) (of Nocardia opaca, induction of, by methyltestosterone and Dianabol) IT 56-75-7 57-92-1, biological studies RL: BIOL (Biological study) (oxosteroid .DELTA.1-dehydrogenase of Nocardia induction by steroid inhibition by) IT 58-18-4 72-63-9 RL: BIOL (Biological study) (oxosteroid .DELTA.1-dehydrogenase of Nocaridia opaca induction by) L4 ANSWER 35 OF 61 CA COPYRIGHT 1996 ACS AN 92:20933 CA TI Atherosclerosis as related to diet AU Tunstall Pedoe, H.; ***Rose, G.*** CS St. Mary's Hosp. Med. Sch., London, Engl. SO Int. Rev. Biochem. (1979), 27(Biochem. Nutr. 1), 245-79 CODEN: IRBID3; ISSN: 0147-7366 DT Journal; General Review LA English CC 18-0 (Animal Nutrition) AB A review with 161 refs. ST review atherosclerosis diet IT Diet (atherosclerosis in relation to) IT Atherosclerosis (diet in relation to) L4 ANSWER 36 OF 61 CA COPYRIGHT 1996 ACS AN 91:163954 CA TI Thermodynamic parameters of liquid gold-aluminum alloys AU Erdelyi, L.; Tomiska, J.; Neckel, A.; ***Rose, G.*** ; Ramakrishnan, E. S.; Fabian, D. J. CS Tech. Univ. Vienna, Vienna, Austria SO Metall. Trans., A (1979), 10A(10), 1437-43 CODEN: MTTABN; ISSN: 0360-2133 DT Journal LA English CC 69-1 (Thermodynamics, Thermochemistry, and Thermal Properties) Section cross-reference(s): 56, 68 AB Thermodn. activities and enthalpies for Au-Al alloys were measured by Knudsen-cell mass spectrometry. The results are consistent and indicate, for Au rich alloys, gold activities with pos. deviations from Raoult ideality. This is in disagreement with emf. measurements of Au activity previously reported; the results also indicate endothermicities that are some 5-6 kJ/mol larger than those indicated by the emf measurements. ST heat alloying gold aluminum; gold aluminum alloying thermodn; activity aluminum gold liq alloy IT Free energy Thermodynamics (of alloying, of aluminum with gold, in liq. state) IT Heat of alloying (of aluminum with gold, in liq. state) IT Activity (of gold, in aluminum-gold liq. alloys) IT 39285-21-7 RL: PRP (Properties) (thermodn. of alloying of liqs.) L4 ANSWER 37 OF 61 CA COPYRIGHT 1996 ACS AN 91:161573 CA TI Microstructural characterization of cast nickel aluminum bronze AU Culpan, E. A.; ***Rose, G.*** CS Admiralty Underwater Weapons Establ., Portland, Engl. SO Report (1978), AUWE-TN-580/78, AUWE-ACC-46194, DRIC-BR-65483; Order No. AD-A063091, 33 pp. Avail.: NTIS From: Gov. Rep. Announce. Index (U. S.) 1979, 79(10), 155 DT Report LA English CC 56-6 (Nonferrous Metals and Alloys) AB The morphol. and chem. anal. of the complex phases present in cast Ni Al bronze [39325-63-8] contg. Al 10, Ni 5, and Fe 5% were detd. by metallog., SEM, and scanning transmission electron microscropy, coupled to an energy dispersive anal. system. The development of structure was detd. from liq. metal to the room temp., including the modifications produced by heat treatment. ST bronze structure phase analysis; aluminum nickel bronze structure IT 39325-63-8 RL: USES (Uses) (morphol. of cast, phase anal. for) L4 ANSWER 38 OF 61 CA COPYRIGHT 1996 ACS AN 90:214459 CA TI Spectrometric studies on N,N'-disubstituted dithiomalonamides and their cobalt(II) complexes AU Schleinitz, K. D.; ***Rose, G.*** ; Kunzek, H.; Koeppel, H. CS Sekt. Chem., Humboldt-Univ., Berlin, E. Ger. SO J. Prakt. Chem. (1979), 321(1), 1-7 CODEN: JPCEAO; ISSN: 0021-8383 DT Journal LA German CC 78-7 (Inorganic Chemicals and Reactions) Section cross-reference(s): 73 AB CoL2 (HL = RNHCSCH2CSNHR, where R = Me, Ph, m-ClC6H4, p-ClC6H4, m-NO2C6H4) were prepd. by reaction of Co(OAc)2 with HL. The complexes were characterized by UV-visible, IR, ESR, and NMR spectra. These Co(II) complexes are S4-coordinated square planar complexes. The orbital splitting parameters of CoL2 were calcd. and are <20,000 cm-1. The spectrochem. series for CoL2 is (with respect to R): Me < m-ClC6H4 < m-NO2C6H4 < p-ClC6H4 < Ph. ST cobalt dithiomalonamide; energy level splitting cobalt dithiomalonamide; thiomalonamide cobalt; malonamide dithio cobalt; UV cobalt dithiomalonamide; IR cobalt dithiomalonamide; NMR cobalt dithiomalonamide IT Infrared spectra Nuclear magnetic resonance Ultraviolet and visible spectra (of cobalt complexes with disubstituted dithiomalonamides) IT Energy level splitting (crystal-field, of cobalt complexes with disubstituted dithiomalonamides) IT 70365-87-6P 70365-88-7P 70365-89-8P 70365-90-1P 70365-91-2P RL: PRP (Properties); SPN (Synthetic preparation); PREP (Preparation) (prepn. and spectra of) L4 ANSWER 39 OF 61 CA COPYRIGHT 1996 ACS AN 90:81264 CA TI In vitro inhibition of .DELTA.4-3-ketosteroid-5.alpha.-reductase from rat liver by steroids AU Schubert, K.; Schumann, G.; ***Rose, G.*** ; Ritter, F.; Strecke, J.; Schlegel, J. CS Zentralinst. Mikrobiol. Exp. Ther., DAW, Jena, E. Ger. SO Endokrinologie (1978), 72(2), 141-8 CODEN: ENDKAC; ISSN: 0013-7251 DT Journal LA German CC 2-3 (Hormone Pharmacology) AB The inhibitory effects of pregnanes, androstanes, and estrogens on the .DELTA.4-3-keto steroid 5.alpha.-reductase [9036-43-5] activity in female rat liver microsomes was studied. In the pregnane series, progesterone [57-83-0], 17.alpha.-hydroxyprogesterone [68-96-2], and 17.alpha.-hydroxyprogesterone acetate [302-23-8] inhibited the enzyme activity >90%. In the androstane and 19-norandrostane series, the enzyme inhibitory effects of the androstane and androstane acetates were similar. In the estratriene series, ethynylestradiol [57-63-6] inhibited the enzyme activity .apprx.90%. In this series, methylation of the phenolic hydroxyl group decreased inhibitory activity. All 5 estriol derivs. inhibited the enzyme .gtoreq.80%. ST keto steroid reductase liver steroid; androstane testosterone hydrogenation liver; pregnane testosterone hydrogenation liver; estrogen testosterone hydrogenation liver; testosterone hydrogenation liver steroid IT Steroids, biological studies RL: BIOL (Biological study) (keto steroid reductase of liver microsome inhibition by) IT Liver, composition (keto steroid reductase of microsome of, steroids inhibition of) IT Microsome (keto steroid reductase of, of liver, steroids inhibition of) IT Molecular structure-biological activity relationship (keto steroid reductase-inhibiting, of steroids) IT 58-22-0 RL: RCT (Reactant) (hydrogenation of, by liver microsome, steroids effect on) IT 50-27-1 50-27-1D, derivs. 50-28-2D, deriv. 57-63-6 57-83-0, biological studies 57-83-0D, derivs. 64-85-7 68-22-4 68-23-5 68-96-2 80-75-1 302-22-7 302-23-8 302-76-1 434-03-7 434-22-0 516-15-4 604-19-3 974-76-5 1035-77-4 1096-38-4 1162-54-5 1162-56-7 1231-93-2 1424-00-6 4567-67-3 6533-00-2 15236-73-4 16669-06-0 18290-31-8 21887-09-2 24275-16-9 24284-83-1 24284-84-2 24749-37-9 24887-75-0D, deriv. 34414-59-0 51946-28-2 51946-32-8 51946-43-1 51946-44-2 51946-45-3 54850-06-5 54982-79-5 63795-53-9 67192-96-5 67192-97-6 67473-36-3 68144-88-7 68144-94-5 68144-95-6 68169-59-5 69311-86-0 69311-87-1 69311-88-2 69311-89-3 69311-90-6 RL: BIOL (Biological study) (keto steroid reductase of liver microsome inhibition by) IT 128-23-4 566-65-4 600-57-7 RL: BIOL (Biological study) (keto steroid reductase of liver microsomes in relation to) IT 52-76-6 57-63-6 427-51-0 2098-66-0 RL: BIOL (Biological study) (ketone steroid reductase of liver microsome in relation to) IT 9036-43-5 RL: BIOL (Biological study) (of liver microsome, steroids effect on) L4 ANSWER 40 OF 61 CA COPYRIGHT 1996 ACS AN 90:27489 CA TI Microstructural characterization of cast nickel aluminum bronze AU Culpan, E. A.; ***Rose, G.*** CS Admir. Underwater Weapons Establ., Portland/Dorset, Engl. SO J. Mater. Sci. (1978), 13(8), 1647-57 CODEN: JMTSAS; ISSN: 0022-2461 DT Journal LA English CC 56-6 (Nonferrous Metals and Alloys) AB The morphol. and chem. anal. of the complex phases in cast bronze contg. 10 Al, 5 Ni, and 5% Fe were investigated using optical and electron microscopy and energy dispersive anal. The .alpha.-phase, .beta.-phase, and 4 forms of .kappa. existed in the as-cast microstructure. Heat treatment lead to pptn. of a further .kappa. phase which differs in morphol. and chem. compn. to those present in the as-cast microstructure. ST bronze cast phase microstructure IT 63706-44-5 RL: USES (Uses) (microstructure of cast) L4 ANSWER 41 OF 61 CA COPYRIGHT 1996 ACS AN 88:139507 CA TI Wonominta Block - regional geology and mineralization AU ***Rose, G.*** CS Geol. Surv. New South Wales, Aust. SO Monogr. Ser. - Australas. Inst. Min. Metall. (1975), 5(Econ. Geol. Aust. Papua New Guinea, Vol. 1), 508-10 CODEN: MSAMDR DT Journal LA English CC 53-2 (Mineralogical and Geological Chemistry) AB The title area consists of the Precambrian sediments of low metamorphic grade. Au, Cu, and Ag-Pb ore deposits occur in the area. ST gold ore deposit Australia; copper ore deposit Australia; silver ore deposit Australia; lead ore deposit Australia IT Geology (of Australia, Wonominta Block) IT Gold ores Silver ores Copper ores, occurrence Lead ores, occurrence RL: OCCU (Occurrence) (of Australia, Wonominta Block) L4 ANSWER 42 OF 61 CA COPYRIGHT 1996 ACS AN 85:61358 CA TI Degradation of steroids: XV. Formation of 9,10-seco-compounds from 4-chlorosubstituted steroids by Nocardia opaca AU Hoerhold, C.; ***Rose, G.*** ; Hueller, E.; Schubert, K. CS Zentralinst. Mikrobiol. Exp. Ther., DAW, Jena, E. Ger. SO J. Steroid Biochem. (1976), 7(3), 199-202 CODEN: JSTBBK DT Journal LA German CC 16-2 (Fermentations) Section cross-reference(s): 32 AB 4-Chlorotestosterone, the corresponding 17.alpha.-methyl-substituted steroid, and the compd. with an addnl. double bond in position 1 (I) have been transformed to 9,10-seco compds. by 9.alpha.-hydroxylation and 1-dehydrogenation in fermn. cultures of N. opaca. I was hydrogenated in position 1 to give 4-chloromethyltestosterone. The metab. of 4-chlorotestosterone could be markedly increased by addn. of estrone. ST steroid degrdn Nocardia; chlorotestosterone metab Nocardia IT Steroids, biological studies RL: BPR (Biological process); BIOL (Biological study); PROC (Process) (metab. of, by Nocardia opaca) IT Nocardia opaca (steroid degrdn. by) IT 5785-58-0 59917-24-7 59917-25-8 59917-26-9 59917-27-0 RL: FORM (Formation, nonpreparative) (formation of, by Nocardia opaca) IT 1093-58-9 2446-23-3 RL: BPR (Biological process); BIOL (Biological study); PROC (Process) (metab. of, by Nocardia opaca) L4 ANSWER 43 OF 61 CA COPYRIGHT 1996 ACS AN 83:148115 CA TI Anionic polyamide urea urethane ionomers AU Lorenz, O.; ***Rose, G.*** CS Fachbereich 3-Chem., Fachhochsch. Aachen, Aachen, Ger. SO Angew. Makromol. Chem. (1975), 45(1), 85-104 CODEN: ANMCBO DT Journal LA German CC 36-3 (Plastics Manufacture and Processing) AB The title ionomers, i.e. adipic acid-ethylenediamine-hexamethylene diisocyanate-1,6-hexanediol-neopentyl glycol-pyromellitic dianhydride polymer [56592-82-6], were prepd. by polymn of NCO-terminated prepolymers with diamines and dianhydrides. Anal. of NCO content indicated that 2:1 diamine-dianhydride adducts which were formed in situ acted as chain-extenders. During prepn. and storage of the dispersions, excess NCO reacted with H2O with chain extension, while in the absence of solvent or dispersant reaction with urea or urethane groups took place. Moduli increased with increasing concn. of CO2- groups, and phys. crosslinks formed by H bonding or coulombic forces could be largely removed by swelling with H2O. ST ionomer anionic polyurethane; polyamide polyurethane ionomer; urea polyurethane ionomer; anhydride polyurethane ionomer; pyromellitic dianhydride ionomer IT Hydrogen bond (crosslinking by, of polyurethane ionomers, swelling effect on) IT Urethane polymers, preparation RL: SPN (Synthetic preparation); PREP (Preparation) (ionomers, prepn. and properties of) IT Crosslinking (phys., of polyurethane ionomers, swelling effect on) IT Polyureas Polyamides, preparation RL: PREP (Preparation) (polyurethane-, ionomers) IT Ionomers RL: SPN (Synthetic preparation); PREP (Preparation) (polyurethane-based, prepn. and properties of) IT 56592-82-6P 56592-83-7P 56592-84-8P RL: SPN (Synthetic preparation); PREP (Preparation) (ionomers, prepn. and properties of) L4 ANSWER 44 OF 61 CA COPYRIGHT 1996 ACS AN 83:74128 CA TI Long-chain fatty acyl-CoA synthetase from rat liver microsomes AU Bar-Tana, J.; ***Rose, G.*** ; Shapiro, B. CS Hadassah Med. Sch., Hebrew Univ., Jerusalem, Israel SO Methods Enzymol. (1975), 35, Pt. B, 117-22 CODEN: MENZAU DT Journal; General Review LA English CC 7-0 (Enzymes) AB A review with 11 refs. on the assay, purifn. and properties of acyl CoA synthetase of liver microsomes. ST review acyl CoA synthetase liver IT Liver, composition (acyl CoA synthetase of microsome of) IT Microsome (acyl CoA synthetase of, of liver) IT 9013-18-7 RL: BOC (Biological occurrence); BIOL (Biological study); OCCU (Occurrence) (of liver microsome) L4 ANSWER 45 OF 61 CA COPYRIGHT 1996 ACS AN 82:167160 CA TI Minimization of construction errors in bent-wire protein models AU Goldberg, D.; Saliterman, S.; Wetlaufer, D. B.; ***Rose, G.*** ; Hopkins, Ted E. CS Med. Sch., Univ. Minnesota, Minneapolis, Minn., USA SO Biopolymers (1975), 14(3), 633-40 CODEN: BIPMAA DT Journal LA English CC 9-13 (Biochemical Methods) Section cross-reference(s): 6 AB Two kinds of errors are found in protein models made with the bent-wire tool of B. Rubin and J. S. Richardson (1972). Global errors result from the accumulation of many errors too small to localize, whereas local errors are assignable to particular bends in the model. The sources of local errors were located and it is shown how to minimize both kinds of errors. ST protein conformation model error; bent wire protein model IT Proteins RL: PRP (Properties) (conformation of, bent-wire models for, construction errors in relation to) IT Chains, chemical (conformation of, of proteins, bent-wire models for) IT Models, physical (for protein conformation, construction errors in bent-wire) L4 ANSWER 46 OF 61 CA COPYRIGHT 1996 ACS AN 80:34689 CA TI Palmitoyl-coenzyme A synthetase. Isolation of an enzyme-bound intermediate AU Bar-Tana, J.; ***Rose, G.*** ; Shapiro, B. CS Dep. Biochem., Heb. Univ. Hadassah Med. Sch., Jerusalem, Israel SO Biochem. J. (1973), 135(3), 411-16 CODEN: BIJOAK DT Journal LA English CC 7-4 (Enzymes) AB Labeling studies showed an enzyme-bound intermediate of the reaction catalyzed by rat liver microsomal palmitoyl-CoA synthetase (E.C. 6.2.1.3) which contained equimolar amts. of adenylate and fatty acid moieties. The intermediate was stabilized by 50mM ATP and reacted with CoA to give palmitoyl-CoA. ST palmitoyl CoA synthetase intermediate; microsome palmitoyl CoA synthetase; mechanism palmitoyl CoA synthetase IT Liver, composition (palmitoyl coenzyme A synthetase of, reaction intermediate of) IT 9013-18-7 RL: BIOL (Biological study) (reaction intermediate of liver microsomal) L4 ANSWER 47 OF 61 CA COPYRIGHT 1996 ACS AN 79:103627 CA TI Microbial hydrogenation of an aromatic system of 17.alpha.-ethinylestradiol AU Schubert, K.; ***Rose, G.*** ; Hoerhold, Claere CS Forschungszent. Molekularbiol. Med., Akad. Wiss., Jena, E. Ger. SO J. Steroid Biochem. (1973), 4(3), 283-8 CODEN: JSTBBK DT Journal LA German CC 16-13 (Fermentations) AB This is the first report on the enzymic hydrogenation of aromatic steroids by molds. Aspergillus flavus transformed 17.alpha.-ethynylestradiol (I) to 10.beta.-hydroxy-19-norethisterone (II). The mold was grown on malt agar slants for 3 days, then for 2 days on a rotary shaker in 100 ml malt water (in 500 ml Florence flask) at 28.degree., then 10 mg steroid in 0.5 ml acetone was added as substrate. Fermn. was continued on the shaker for another 2 days. The culture liquid was extd. with CHCl3 and the combined exts. were evapd. to dryness in vacuo. Identification was by thin layer chromatog. Under aerobic conds., A. flavus was capable of hydrogenation and 10.beta.-hydroxylation only on 17.alpha.-methylestradiol, and of hydrogenation without 10.beta.-hydroxylation only on 19-norandrost-1-ene-3,17-dione and 1,4-androstadiene-3,17-dione. There was no action on estradiol, 19-nortestosterone, 3-deoxytestosterone, and norgestrel. Under anaerobic conds., A. flavus was capable of hydrogenation, but not of 10.beta.-hydroxylation, of ethynylestradiol only. There was no action on estradiol or norethisterone. ST ethynylestradiol hydrogenation Aspergillus; steroid hydrogenation Aspergillus; norethisterone formation Aspergillus IT Aspergillus flavus (arom. steroid hydrogenation by) IT Steroids, biological studies RL: BIOL (Biological study) (arom., hydrogenation by Aspergillus) IT Hydrogenation (of arom. steroids, by Aspergillus) IT 1236-00-6 RL: FORM (Formation, nonpreparative) (formation of, from ethynylestradiol by Aspergillus) IT 57-63-6 RL: RCT (Reactant) (hydrogenation of, by Aspergillus) L4 ANSWER 48 OF 61 CA COPYRIGHT 1996 ACS AN 78:120845 CA TI Rat liver microsomal palmitoyl-coenzyme A synthetase. Structural properties AU Bar-Tana, J.; ***Rose, G.*** CS Hadassah Med. Sch., Heb. Univ., Jerusalem, Israel SO Biochem. J. (1973), 131(3), 443-9 CODEN: BIJOAK DT Journal LA English CC 7-5 (Enzymes) AB Unavailable ST palmitoyl CoA synthetase liver; phospholipid palmitoyl CoA synthetase IT Liver, composition (acyl coenzyme A synthetase of microsomes of, structure of) IT Phospholipids Amino acids, biological studies RL: BIOL (Biological study) (of acyl coenzyme A synthetase) IT 9013-18-7 RL: BIOL (Biological study) (structure of liver microsomal) L4 ANSWER 49 OF 61 CA COPYRIGHT 1996 ACS AN 78:94317 CA TI Palmitoyl-coenzyme A synthetase. Mechanism of reaction AU Bar-Tana, J.; ***Rose, G.*** ; Brandes, R.; Shapiro, B. CS Hadassah Med. Sch., Hebrew Univ., Jerusalem, Israel SO Biochem. J. (1973), 131(2), 199-209 CODEN: BIJOAK DT Journal LA English CC 7-4 (Enzymes) AB The mechanism of long-chain fatty acid activation catalyzed by highly purified microsomal palmitoyl-CoA synthetase (EC 6.2.1.3) was studied. The kinetics of the overall reaction indicated a Bi Uni Uni Bi Ping Pong mechanism. 18O was transferred from palmitate-18O to AMP and palmitoyl-CoA exclusively. An enzyme-bound palmitate intermediate was formed in the presence of ATP. However, pulse-labeling expts. with ATP-U-14C, ATP-.gamma.-32P, and palmitoyl-3H-CoA could not show that the intermediate was definitely palmitoyl-AMP. ST palmitoyl CoA synthetase mechanism; kinetics palmitoyl CoA synthetase IT Michaelis constant Kinetics, enzymic (of acyl coenzyme A synthetase) IT 9013-18-7 RL: MSC (Miscellaneous); PRP (Properties) (reaction mechanism of) L4 ANSWER 50 OF 61 CA COPYRIGHT 1996 ACS AN 78:13276 CA TI Microsomal palmitoyl-coenzyme A synthetase from rat liver. Partial and exchange reactions AU Bar-Tana, J.; ***Rose, G.*** ; Shapiro, B. CS Hadassah Med. Sch., Heb. Univ., Jerusalem, Israel SO Biochem. J. (1972), 129(5), 1101-7 CODEN: BIJOAK DT Journal LA English CC 7-4 (Enzymes) AB The partial and exchange reactions of long-chain fatty acid activation were detd. by using purified microsomal long-chain fatty acyl-CoA synthetase (EC 6.2.1.3). No significant ATP formation from palmitoyl-AMP (I) and pyrophosphate, nor I-dependent CoA disappearance was obsd. and no palmitate-dependent pyrophosphate-32P2-ATP exchange was catalyzed by the pure enzyme. These reactions were, however, catalyzed by the parent microsomal fraction at rates similar to the overall rates. Two enzyme activities must be involved in microsomal acyl-CoA synthesis. The microsomal partial reactions may reflect activity related to the enzyme involving bound I as an intermediate, but the second activity, isolated as the pure enzyme fraction, may comprise activity catalyzing fatty acid activation in the absence of partial reactions. ST palmitoyl CoA synthetase liver; microsome palmitoyl CoA synthetase; fatty acyl CoA synthetase; Michaelis const synthetase; kinetics palmitoyl CoA synthetase IT Michaelis constant (of palmitoyl coenzyme A synthetase) IT Kinetics, enzymic (of palmitoyl coenzyme A synthetase, partial and exchange reactions in) IT 9013-18-7 RL: PRP (Properties) (reaction kinetics of, partial and exchange reactions in) L4 ANSWER 51 OF 61 CA COPYRIGHT 1996 ACS AN 76:137736 CA TI Determination of oxygen-18 content of phosphate compounds. Novel method AU Bar-Tana, J.; Ben-Zeev, O.; ***Rose, G.*** ; Deutsh, J. CS Hadassah Med. Sch., Heb. Univ., Jerusalem, Israel SO Biochim. Biophys. Acta (1972), 264(1), 214-19 CODEN: BBACAQ DT Journal LA English CC 9 (Biochemical Methods) AB Silylation of phosphate and phosphate-contg. compds. provides a suitable means for the direct measurement of the 18O content of phosphate compds. The silylation procedure is described for 2 model systems: ATP hydrolysis by H218O and 18O transfer from HOAc-carboxy-18O to AMP. An evaluation of the suggested procedure is presented. ST phosphate oxygen isotope detn IT Phosphates, analysis RL: ANST (Analytical study) (oxygen-18 detn. in, by silylation and mass spectroscopy) IT 9000-95-7 RL: ANST (Analytical study) (ATP hydrolysis by, detn. of oxygen-18 transfer in) IT 14797-71-8, analysis RL: ANT (Analyte); ANST (Analytical study) (detn. of, in phosphates by silylation and mass spectroscopy) IT 56-65-5, biological studies RL: RCT (Reactant) (hydrolysis of, by apyrase, detn. of oxygen-18 transfer in) IT 9012-31-1 RL: ANST (Analytical study) (oxygen-18 transfer to AMP from acetic acid by, detn. of) IT 61-19-8, biological studies RL: BIOL (Biological study) (oxygen-18 transfer to, from acetic acid by acetyl coenzyme A synthetase, detn. of) L4 ANSWER 52 OF 61 CA COPYRIGHT 1996 ACS AN 76:94924 CA TI Metabolism of steroid drugs. VIII. Structure-metabolism relations in the microbiol of hydrogenation various substituted testosterone derivatives AU Schubert, K.; Schlegel, J.; Groh, H.; ***Rose, G.*** ; Hoerhold, Claere CS Zentralinst. Mikrobiol. Exp. Ther., Dtsch. Akad. Wiss. Berlin, Berlin, Ger. SO Endokrinologie (1972), 59(1), 99-114 CODEN: ENDKAC DT Journal LA German CC 2 (Hormone Pharmacology) AB Metabolism of the androgen-anabolic steroids, testosterone [58-22-0], methyltestosterone [58-18-4], 1-dehydromethyltestosterone [72-63-9], 4-chloromethyltestosterone [5785-58-0], and 1-dehydro-4-chloromethyltestosterone [34417-59-9], by Aspergillus flavus, Clostidium paraputrificum, and Rhodotorula glutinis was investigated as a possible model for the hydroxylation and hydrogenation pathways in mammalian steroid metabolism. Testosterone was hydroxylated in the B ring after oxidn. to androstenedione by A. flavus, whereas 4-chloro-17.alpha.- methyltestosterone and 1-dehydromethyltestosterone were metabolized to 15-hydroxy compds. The 15-hydroxylation was a function of the 17.alpha.-methyl group, whereas a chloro substituent or a double bond in ring A detd. the stereospecificity (15-.alpha. or 15-.beta.). The stereospecificity of the 3.alpha.-OH/5.beta.-H- hydrogenase of C. paraputrificum was observed with all substrates. 1-Dehydro-4-chloro-17.alpha.-methyltestosterone was metabolized to a deriv. with a 1-en-3.alpha.-OH-allyl structure in contrast to 1-dehydro-17.alpha.-methyltestosterone which gave the 3.alpha./5.beta.-hexahydro product. The R. glutinis metabolized testosterone and 17.alpha.-methyltestosterone to 3.alpha.-OH/5.alpha.-H and 3.beta.-OH/5.alpha.-H derivs. 4-Chloro-17.alpha.-methyltestosterone was incompletely metabolized. No hydrogenation products were formed from 1-dehydro-17.alpha.- methyltestosterone, but from 1-dehydro-4-chloro-17.alpha.- methyltestosterone a 1-en-3.beta.-OH/5.alpha.-H-allyl deriv. was isolated. ST testosterone metab microbe; Aspergillus testosterone metab; Clostridium testosterone metab; Rhodotorula testosterone metab IT Aspergillus flavus Clostridium paraputrificum Rhodotorula glutinis (testosterone derivs. metabolism by) IT 35937-37-2 RL: FORM (Formation, nonpreparative) (formation of, from chloromethyltestosterone, by Aspergillus flavus) IT 35937-40-7 35937-41-8 RL: FORM (Formation, nonpreparative) (formation of, from chloromethyltestosterone, by Rhodotorula glutinis) IT 27471-86-9 27471-87-0 RL: FORM (Formation, nonpreparative) (formation of, from dehydrochloromethyltestosterone) IT 27471-88-1 29834-97-7 RL: FORM (Formation, nonpreparative) (formation of, from dehydrochloromethyltestosterone, by Clostridium paraputrificans) IT 27471-90-5 27471-91-6 RL: FORM (Formation, nonpreparative) (formation of, from dehydrochloromethyltestosterone, by Rhodotorula glutinis) IT 35937-38-3 RL: FORM (Formation, nonpreparative) (formation of, from dehydromethyltestosterone, by Clostridium paraputrificans) IT 35937-36-1 36018-59-4 RL: FORM (Formation, nonpreparative) (formation of, from dehydrotestosterone, by Aspergillus flavus) IT 641-82-7 RL: FORM (Formation, nonpreparative) (formation of, from methyltestosterone by Rhodotorulia glutinis) IT 13096-49-6 35937-34-9 35937-35-0 RL: FORM (Formation, nonpreparative) (formation of, from methyltestosterone, by Aspergillus flavus) IT 641-83-8 RL: FORM (Formation, nonpreparative) (formation of, from methyltestosterone, by Rhodotorula glutinis) IT 4085-03-4 RL: FORM (Formation, nonpreparative) (formation of, from testosterone derivs., by Clostridium paraputrificans) IT 62-84-0 63-00-3 63-05-8 4416-57-3 RL: FORM (Formation, nonpreparative) (formation of, from testosterone, by Aspergillus flavus) IT 1851-23-6 RL: FORM (Formation, nonpreparative) (formation of, from testosterone, by Clostridium paraputrificum) IT 571-20-0 1852-53-5 RL: FORM (Formation, nonpreparative) (formation of, from testosterone, by Rhodotorula glutinis) IT 35937-39-4 RL: BIOL (Biological study) (formaton of, from chloromethyltestosterone, by Clostridium paraputrificans) IT 58-18-4 58-22-0 72-63-9 2446-23-3 5785-58-0 RL: BPR (Biological process); BIOL (Biological study); PROC (Process) (metabolism of, by microorganisms) IT 35937-42-9P RL: SPN (Synthetic preparation); PREP (Preparation) (prepn. of) L4 ANSWER 53 OF 61 CA COPYRIGHT 1996 ACS AN 75:15328 CA TI Purification and properties of microsomal palmitoyl-coenzyme A synthetase AU Bar-Tana, J.; ***Rose, G.*** ; Shapiro, B. CS Hadassah Med. Sch., Heb. Univ., Jerusalem, Israel SO Biochem. J. (1971), 122(3), 353-62 CODEN: BIJOAK DT Journal LA English CC 3 (Enzymes) AB Palmitoyl-CoA synthetase was isolated and purified from rat liver microsomes. The lipid components were removed by treatment of the freeze-dried microsomal prepns. with org. solvents before dissolution of the particles by detergent. A min. concn. of detergents was also maintained throughtout the purification procedure. The procedure may facilitate the isolation of other membrane enzymes that have resisted purification. The enzyme had a pH optimum of 8-9. The enzyme required Mg2+, ATP, CoA, and the presence of detergent for activity. Palmitate was the best substrate for the enzyme, but laurate, myristate, stearate, and linoleate were also good substrates. Km Values were 42, 22, 11, 15, 15, and 25 .mu.M for palmitate, myristate, laurate, stearate, oleate, and linoleate, resp. ST palmitoyl CoA synthetase purifn props; fatty acyl CoA synthetase purifn IT Synthetases, acyl coenzyme A (of liver, purification of) IT Michaelis constant (of palmitoyl coenzyme A synthetase) IT Liver, composition (palmitoyl coenzyme A synthetase of microsomes of) IT 1763-10-6 14000-31-8 RL: RCT (Reactant) (reaction of, with palmitoyl coenzyme A synthetase, Michaelis const. for) IT 56-65-5, reactions 57-10-3, reactions 57-11-4, reactions 60-33-3, reactions 61-19-8, reactions 85-61-0, reactions 112-80-1, reactions 143-07-7, reactions 544-63-8, reactions RL: RCT (Reactant) (with palmitoyl coenzyme A synthetase, Michaelis const. for) L4 ANSWER 54 OF 61 CA COPYRIGHT 1996 ACS AN 74:33697 CA TI Morphology of winter anomaly of absorption AU Dieminger, W.; ***Rose, G.*** ; Schwentek, H.; Widdel, H. U. CS Max-Planck-Inst. Aeron., Lindau Harz, Ger. SO Proc. Int. Space Sci. Symp. (1967), Volume Date 1966, 7(Vol. 1), 228-39 CODEN: PSPSAE DT Journal LA English CC 53 (Mineralogical and Geological Chemistry) AB The characteristics of the winter anomaly of ionospheric absorption are summarized. ST winter anomaly ionospheric absorption; ionospheric absorption winter anomaly; absorption ionospheric winter anomaly IT Ionosphere (absorption in, winter anomaly of) L4 ANSWER 55 OF 61 CA COPYRIGHT 1996 ACS AN 71:57814 CA TI Sterols in bacteria AU Schubert, Kurt; ***Rose, G.*** ; Hoerhold, Claere CS Deut. Akad. Wiss. Berlin, Jena, Ger. SO Abh. Deut. Akad. Wiss. Berlin, Kl. Med. (1969), Volume Date 1968, No. 2, 53-6 CODEN: ADWMAX DT Journal LA English CC 8 (Microbial Biochemistry) AB The sterol (I) content of several strains of bacteria has been investigated. Escherichia coli contains 7, Azotobacter chroococcum 6, and Streptomyces olivaceus one I. For the detn. of mass nos. and quant. estn., the method of mass mol. spectrometry with ionization by addn. of neg. ions was used. The quantities of I in bacteria are small. The isolation and identification of I show that bacteria may not differ from more highly developed organisms in respect to the presence of I. The bacteria synthesize and also degrade I. ST sterols bacteria; bacteria sterols; synthesis sterols bacteria IT Steroids, biological studies RL: BIOL (Biological study) (hydroxy, in bacteria) IT Bacteria (sterols in) L4 ANSWER 56 OF 61 CA COPYRIGHT 1996 ACS AN 69:83526 CA TI Medium-chain fatty acyl coenzyme A synthetase. Enzyme fraction II: mechanism of reaction and specific properties AU Bar-Tana, J.; ***Rose, G.*** CS Hadassah Med. Sch., Hebrew Univ., Jerusalem, Israel SO Biochem. J. (1968), 109(2), 283-92 CODEN: BIJOAK DT Journal LA English CC 3 (Enzymes) AB The mechanism of reaction of fatty acyl CoA synthesis catalyzed by fatty acyl CoA synthetase from ox liver (fraction II; Bar-Tana, Rose, and Shapiro (1968)) was investigated by a kinetic study of CoA disappearance dependent on butyrate plus ATP or butyryl-AMP (overall and partial reaction b, resp.). Contrary to findings with another enzyme (fraction I), a Bi Uni Uni Bi Ping Pong mechanism (Cleland (1963)) corresponding to Berg's (1956) scheme of reaction was eliminated and an ordered Ter Ter mechanism with an A-C-B (standing for ATP, CoA and butyrate, resp.) sequence of substrate entry for the overall reaction was established for fraction II. Partial reaction b was found to follow the "Iso-Theorell-Chance" mechanism. Also, in contrast with results obtained with fraction I, no allosteric properties could be demonstrated with fraction II. ST fatty acl CoA synthetase; mechanism acyl CoA synthetase; acyl CoA synthetase mechanism; kinetics acyl CoA synthetase IT Kinetics, enzymic (of acyl coenzyme A synthetase) IT Synthetases, acyl coenzyme A (reaction mechanism of) L4 ANSWER 57 OF 61 CA COPYRIGHT 1996 ACS AN 69:83525 CA TI Medium-chain fatty acyl coenzyme A synthetase. Enzyme fraction I: mechanism of reaction and allosteric properties AU Bar-Tana, J.; ***Rose, G.*** CS Hadassah Med. Sch., Hebrew Univ., Jerusalem, Israel SO Biochem. J. (1968), 109(2), 275-82 CODEN: BIJOAK DT Journal LA English CC 3 (Enzymes) AB The mechanism of butyrate activation catalyzed by an enzyme fraction derived from ox liver particles (fraction I; Bar-Tana, Rose, and Shapiro (1968)) was studied by an anal. of the initial-velocity pattern of the overall reaction and found to conform to the Bi Uni Uni Bi Ping Pong model (Cleland (1963)) in agreement with the reaction scheme proposed by Berg (1956). A homotropic co-operative effect was exerted by CoA on fraction I, whereas ATP and AMP functioned as heterotropic co-operative ligands with respect to butyryl-AMP-dependent CoA disappearance. On the other hand, PPi and butyryl CoA showed antagonistic heterotropic effects when tested under similar conditions. With respect to the overall reaction CoA and ATP could be shown to function as co-operative homotropic modifiers. Two interchangeable conformational states of the enzyme are therefore presumed to exist, state R, having a higher affinity for CoA and ATP and thus preferentially catalyzing butyryl-AMP-dependent CoA disappearance (partial reaction b), and state T, favored by the presence of PPi, catalyzing the formation of ATP from butyryl-AMP and PPi (partial reaction a) with greater efficiency. These findings serve to explain the opposite effects of ATP on the partial reactions, as well as the inhibition by CoA and ATP of ATP formation (reaction a) and by PPi of the butyryl-AMP-dependent CoA disappearance (reaction b) (Bar-Tana, et al. (1968)). The possible analogy of these observations to amino acid-activating and other similar systems is discussed. ST acyl CoA synthetase mechanism; mechanism acyl CoA synthetase; allosteric props CoA synthetase; CoA synthetase allosteric props IT Kinetics, enzymic (of acyl coenzyme A synthetase) IT Synthetases, acyl coenzyme A (reaction mechanism and allosteric properties of) L4 ANSWER 58 OF 61 CA COPYRIGHT 1996 ACS AN 69:83524 CA TI Medium-chain fatty acyl coenzyme A synthetase. Purification and properties AU Bar-Tana, J.; ***Rose, G.*** ; Shapiro, B. CS Hadassah Med. Sch., Hebrew Univ., Jerusalem, Israel SO Biochem. J. (1968), 109(2), 269-74 CODEN: BIJOAK DT Journal LA English CC 3 (Enzymes) AB Medium-chain fatty acyl CoA synthetase (EC 6.2.1.2) was isolated by the method of Mahler, Wakil, and Bock (1953) and the enzyme activity detd. by the disappearance of CoA in the presence of butyrate and ATP or of butyryl-AMP, as well as by ATP formation from butyryl-AMP and PPi. Preincubation of the enzyme with CoA and ATP alone or together, followed by the removal of these substrates by gel filtration, caused a marked inhibition of ATP formation, contrary to results previously obtained with palmitoyl CoA synthetase. The effect of ATP on butyryl-AMP-dependent CoA disappearance was inconsistent. Low concns. of ATP (0.1-0.5 mM) always caused inhibition, whereas higher concns. (5-10 mM) activated in some enzyme prepns. and inhibited in others. This inconsistency was shown to be due to the presence of 2 enzyme fractions. Both fractions had similar activities when assayed by the butyryl-AMP- or butyrate-plus-ATP-dependent CoA disappearance. However, fraction I was activated by ATP as measured by butyryl-AMP-dependent CoA disappearance whereas fraction II was inhibited by it. Fraction I also catalyzed ATP formation from butyryl-AMP and PPi whereas fraction II was lacking in such activity. The relation of these observations with respect to other known mechanisms of fatty acid-activating systems is discussed. ST fatty acyl CoA synthetase; acyl CoA synthetase; CoA synthetase purifn IT Kinetics, enzymic (of acyl-coenzyme A synthetase) IT Synthetases, acyl coenzyme A (purification and properties of) IT 56-65-5, biological studies RL: BIOL (Biological study) (acyl-coenzyme A synthetase response to) L4 ANSWER 59 OF 61 CA COPYRIGHT 1996 ACS AN 69:69985 CA TI The effect of capillary liquid on the force of adhesion between spherical solid particles. Comment AU Gillespie, T.; ***Rose, G. D.*** CS Edgar C. Britton Res. Lab., Dow Chem. Co., Midland, Mich., USA SO J. Colloid Interface Sci. (1968), 26(2), 246-7 CODEN: JCISA5 DT Journal LA English CC 66 (Surface Chemistry and Colloids) AB Data are presented to refute the criticism of Gilespie and Settineri (ibid., 1967, 24, 199) on Fisher's theory. Modifying the procedure for cleaning the beads altered the results so that smaller forces at high surface-tension values were obtained than those reported. ST adhesion solids effect capillary liq; solids adhesion effect capillary liq IT Particles (adhesion between spherical solid, capillarity effect on, Fisher's theory in relation to) IT Adhesion (between spherical solid particles, capillarity effect on, Fisher's theory in relation to) IT Capillarity (effect on adhesion forces between spherical solid particles, Fisher's theory in relation to) L4 ANSWER 60 OF 61 CA COPYRIGHT 1996 ACS AN 69:49901 CA TI Occurrence of sterols in bacteria AU Schubert, K.; ***Rose, G.*** ; Wachtel, H.; Hoerhold, C.; Ikekawa, N. CS Deut. Akad. Wiss. Berlin, Jena, Ger. SO Eur. J. Biochem. (1968), 5(2), 246-51 CODEN: EJBCAI DT Journal LA German CC 8 (Microbial Biochemistry) AB Investigations concerning sterols were made in strain of each of 9 species of bacteria and 1 representative of the basidiomycetes through adsorption chromatog., gas chromatog., and mass spectrometry as well as uv and ir spectroscopy. Three strains contained sterols in quantities from 0.0004 to 0.01% of the dry wt. In Azotobacter chroococcum 6 sterols were demonstrated. In 6 strains sterols were not detectable. The limit of detectability at present is at 0.0001% sterol related to 100 g. dry cells. From the ext. of Aerobacter cloacae, which contained no sterol, a C16-hydroxyketone was isolated. ST sterol compn bacteria; Azotobacter sterol compn; Aerobacter sterol compn; basidiomycetes chromatog sterols IT Azotobacter (chroococcum, sterols of) IT Steroids, biological studies RL: BIOL (Biological study) (hydroxy, of bacteria) IT Bacteria (sterols of) IT Ergost-7-en-3.beta.-ol RL: BIOL (Biological study) (in Azotobacter chroococcum) IT 57-87-4 79-63-0 5241-24-7 7448-02-4 17608-76-3 RL: BIOL (Biological study) (in Azotobacter chroococcum) L4 ANSWER 61 OF 61 CA COPYRIGHT 1996 ACS AN 69:30393 CA TI Gas transport through supported Langmuir-Blodgett multilayers AU ***Rose, G. D.*** ; Quinn, J. A. CS Univ. of Illinois, Urbana, Ill., USA SO J. Colloid Interface Sci. (1968), 27(2), 193-207 CODEN: JCISA5 DT Journal LA English CC 66 (Surface Chemistry and Colloids) AB Mass transfer coeffs. for Langmuir-Blodgett multilayers deposited onto permeable support films were measured for 3 gases: CO2, N, and He. For stearate multilayers varying in thickness from 48 to 4 deposited layers (1200 to 100 A.), the permeabilities [in(cc.(STP)-cm.)/(cm.2-sec.-cm. Hg)] range from 4 to 20 .times. 10-10 for CO2, from 1 to 8 .times. 10-10 for He, and from 0.5 to 2 .times. 10-10 for N. The measured permeabilities were essentially independent of the surface pressure at which the monolayers were deposited for surface pressures between 9 and 29 dynes/cm. Tracer techniques were used to observe both the regularity and concn. of the deposited layers. Results were also obtained for oleic acid and 3.beta.-cholestanol. The cholestanol permeabilities were comparable to those of stearic acid whereas the oleic acid values were at least an order of magnitude larger. The results are compared to permeabilities of polymeric films and monolayers on aq. substrates. ST permeable films; films permeable; gas transport; Langmuir Blodgett multilayers IT Mass transfer (in permeation of gases through supported multilayers) IT Permeation (of gases, through supported multilayers) IT 57-11-4, properties 80-97-7 112-80-1, properties RL: PRP (Properties) (permeation by supported multilayers of, of gases) IT 124-38-9, properties 7440-59-7, properties 7727-37-9, properties RL: PRP (Properties) (permeation of, through supported multilayers) => ^Y => log Y COST IN U.S. DOLLARS SINCE FILE TOTAL ENTRY SESSION FULL ESTIMATED COST 205.45 205.65 DISCOUNT AMOUNTS (FOR QUALIFYING ACCOUNTS) SINCE FILE TOTAL ENTRY SESSION CA SUBSCRIBER PRICE -46.64 -46.64 STN INTERNATIONAL LOGOFF AT 17:38:30 ON 02 JUL 96