Re: Scientists Complete Map of Second Human Chromosome, etc.

From: Stephen E. Jones (sejones@iinet.net.au)
Date: Sun May 14 2000 - 03:58:04 EDT

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    Reflectorites

    Here are excerpts for the period 26 April-8 May 2000, from Yahoo!,
    with my comments in square brackets.

    Steve

    =====================================================
    http://dailynews.yahoo.com/h/nm/20000508/sc/human_chromosome_1.html
    Yahoo! ... May 8 ... Scientists Complete Map of Second Human
    Chromosome ... LONDON (Reuters) - Scientists announced
    Monday that they had deciphered the genetic code of chromosome
    21 which will improve understanding of Down's Syndrome,
    Alzheimer's disease and a range of other disorders. Chromosome
    21 is the smallest of the 23 pairs of human chromosomes, with an
    estimated 225 protein-coding genes, and only the second to be
    completely deciphered. A consortium of international
    scientists...mapped the sequence .... The genetic map will help
    scientists develop more precise diagnostic tests and new
    treatments for diseases linked to the chromosome, including a
    particular type of epilepsy, auto- immune diseases and an
    increased susceptibility to leukemia. "The challenge now is to
    unravel the function of all the genes on chromosome 21," .... The
    small number of genes on the chromosome and the 545 active
    genes in chromosome 22, which was sequenced last year, have
    also led the scientists to revise the estimated total number of
    human genes to 40,000 from 70,000 to 100,000 genes. Up to a
    third of chromosome 21 contained no genes. Both chromosomes
    are small, but together they make up two to three percent of the
    human genome, the basic blueprint of life. Each chromosome is
    made up of a molecule of DNA in the shape of a double helix which
    is composed of four chemical bases represented by the letters A
    (adenine), T (thymine), G (guanine) and C (cytosine). The
    arrangement, or sequence, of the letters determines the cell's
    genetic code. The scientists mapped out the 33.5 million base pairs
    of chromosome 21. The human genome contains three billion base
    pairs of DNA ... The achievement is particularly significant for the
    study of Down's Syndrome, which affects one in 700 live births. The
    complex disorder is caused by an extra copy of the chromosome.
    .... We have to design novel strategies because the problem of
    Down's Syndrome is not a mutation. It is too much of something --
    that is one more chromosome," .... In addition to Down's Syndrome,
    chromosome 21 is also linked to the early onset Alzheimer's
    disease, certain types of leukemia, a form of manic depression and
    congenital heart disease. ... [Another *great* milestone. But
    knowing the map does not tell one much about the real-life objects
    represented by it, and their relationships. It might be many years
    before any treatments are available based on this new knowledge.
    And legal battles (see next story) might delay these still further.]

    http://dailynews.yahoo.com/h/nm/20000508/sc/genome_project_2.html
    Yahoo! ... May 8 ... DoubleTwist, Sun Sell Analysis of Human
    Genome By Maggie Fox, Health and Science Correspondent
    WASHINGTON (Reuters) - Two California companies said on
    Monday they had teamed up to sell what they hope will eventually
    be a complete map of the collection of human genes, as provided
    by the publicly funded Human Genome Project. The companies,
    DoubleTwist, Inc. and Sun Microsystems, Inc. ..., said their alliance
    would allow subscribers to get a map and partial analysis of just
    over half the genes and eventually all 100,000 or so human genes
    off an Internet site. ... Researchers at the Human Genome Project
    welcomed the news, saying it was what they hoped people would
    do with their data. ... Couch said his company will be competing
    with Celera Genomics ... which is doing its own sequencing and
    analysis of the human genome and selling it to subscribers .... "With
    today's announcement, the stage is set for a new era of discovery,"
    .... "What the Web browser is to the Internet, DoubleTwist.com is to
    the human genome. It makes this whole complex collection of
    information easy to use." [This must be Celera's Craig Venter's
    worst nightmare. If he can't patent the genome, anyone who has
    the computer muscle can post it to their website and even give it
    away for free, making a profit from it by advertising, as
    Encyclopaedia Britannica is now doing. I expect Venter and others
    might try to protect their investment by legal action.]

    http://dailynews.yahoo.com/h/nm/20000504/sc/safrica_aids_1.html
    Yahoo! ... May 4 ... South Africa President Appoints AIDS
    Dissidents By Steven Swindells PRETORIA (Reuters) - South
    Africa, which has one of the world's highest AIDS infection rates,
    waded into controversy ... by appointing two leading American
    AIDS dissidents to a presidential advisory board on the epidemic.
    The appointment of prominent U.S. scientists Peter Duesberg and
    David Rasnick, who deny that HIV causes AIDS, is expected to
    spark fresh international criticism of South Africa where one in ten
    of the country's 43 million people are HIV-positive. Pretoria said the
    decision to invite Duesberg, Rasnick and other so-called dissidents
    to the 33-member panel of international scientists was to heighten
    debate on how to tackle the epidemic and stop millions from dying.
    ... The panel, roughly balanced between orthodox scientists and
    dissidents, will meet for the first time this weekend, after it is
    convened by Mbeki, Pahad said. It will make its recommendations
    to the president in July... But the appointment of high-profile
    dissidents to the body so close to the presidency ... raises fears
    that the government's attempts to fight the disease could be
    blunted. ...Mbeki wrote a personal letter to President Clinton and
    other world leaders last month comparing his critics in the scientific
    community to the tyranny of the Spanish Inquisition and the
    apartheid regime that ruled South Africa for more than four
    decades. Mbeki has said that the West's experience with dealing
    with AIDS cannot simply be superimposed on Africa because of
    poverty and because, he says, AIDS is predominantly transmitted
    heterosexually in Africa, rather than homosexually. Mbeki's position
    is that because there is no cure for HIV-AIDS and people die from
    the complex disease, the search for a solution must continue and
    the debate must be reinvigorated. Dissident doyen Duesberg, a
    member of the National Academy of Scientists, has argued that
    AIDS differs around the world, that it is a sociological phenomenon
    and that cocktails of drugs used in the West to stem HIV are
    dangerously toxic. .... See also:
    http://dailynews.yahoo.com/h/nm/20000506/sc/aids_safrica_1.html
    Yahoo! ... May 6 ... S. Africa Controversial AIDS Panel Starts Work
    ...The challenge facing scientists on the panel ... came from
    Duesberg who said that that there was no sign of a new epidemic in
    South Africa caused by AIDS. "There is no clear evidence of a new
    epidemic," ... South Africa's birthrate was higher than ever, its infant
    mortality had not gone up, deaths were not caused by HIV and that
    those suffering from illnesses could be treated with "old solutions."
    "Is there even a new epidemic? Is anything new happening? You
    need to know what the cause is before you start treating it,"
    Duesberg said. Panel member physician Christian Fiala from
    Austria said figures for HIV-AIDS in Africa were being exaggerated
    since people were being misdiagnosed as having AIDS when they
    had treatable infectious diseases such as diarrhea caused by low
    living standards. ... ; &
    http://dailynews.yahoo.com/h/nm/20000507/sc/safrica_aids_2.html
    Yahoo! ... May 7 ...South Africa Gives AIDS Maverick Role in Task
    Force ... PRETORIA, South Africa (Reuters) - South Africa
    appointed leading American "AIDS dissident" Peter Duesberg
    Sunday to a powerful government team tasked with staging
    experiments that could prove or reject orthodox science's view that
    AIDS is caused by HIV ... Duesberg, professor of molecular and
    cell biology at the University of California, Berkeley, has denied
    orthodox science's view that HIV leads to AIDS. The cancer pioneer
    has insisted that AIDS is caused by a breakdown of the immune
    system caused by recreational and anti-HIV drugs such as AZT and
    by poor living standards. Elected to the U.S. National Academy of
    Sciences in 1986, Duesberg has since been ostracized by
    mainstream science which rejects his theories and fears that
    debate over HIV-AIDS merely wastes time in the fight to save
    millions of lives ... he doubted South Africa was experiencing an
    AIDS epidemic. ... [Hopefully this might finally sort out two different
    but related questions: 1) what is the causal relationship (if any)
    between HIV and AIDS?; and 2) are highly toxic drug cocktails the
    best treatment, all things considered? It is possible that the
    dissidents could be wrong on 1) but still be right on 2). Indeed,
    whatever the outcome this might mark the beginning of a new
    chapter in the history of science when the Third World begins to
    challenge the influence of three centuries of Western cultural
    dominance.]

    http://dailynews.yahoo.com/h/nm/20000508/sc/space_planets_2.html
    Yahoo! ... May 8 ... Eight New Possible Planets Detected
    WASHINGTON (Reuters) - European astronomers on Monday
    reported detecting signs that eight planets, some of them possibly
    larger than Jupiter, may be orbiting stars outside our own solar
    system. These discoveries bring the number of potential extrasolar
    planets to more than 40. ... None of the planet candidates have
    ever been seen by humans, but scientists believe they are there
    because of the gravitational pull they exert on the stars they orbit.
    Two of the eight new candidates may not be planets at all, the
    European scientists said in a statement, but could instead be
    brown dwarfs, which have a bit less mass than stars and
    completely lack a star's interior nuclear power source. Three of the
    new planet possibilities are about the size of Saturn or smaller,
    three are one to three times the size of Jupiter and two are 10
    times the size of Jupiter or larger. All of these are far larger than
    Earth ... [While I have no problem if these do turn out to be planets
    it seems scientifically inaccurate to actually claim that these stellar
    orbital irregularities *are* planets, or even candidate planets, until
    at least one such extrasolar planet has actually been observed.
    This might turn out to be the 21st century version of the wished for
    canals on Mars!]

    http://dailynews.yahoo.com/h/nm/20000503/sc/science_tools_1.html
    Yahoo! ... May 3 ... Stone Tools Hold New Clues About Human Evolution
    ... LONDON (Reuters) - Ancient stone tools found on the Red Sea coast
    of Eritrea in East Africa are providing new clues about the evolution and
    migration of modern humans ... The 125,000-year-old tools unearthed by
    American and Eritrean researchers are the earliest well documented
    evidence of when modern humans adapted to a marine environment and a
    new way of providing food. They also support the "out of Africa" theory --
    that humans evolved from a common ancestor in Africa and spread across
    the world. ... "We were able to date the sequence of coral and shallow
    marine sediment in which the tools were discovered very accurately and
    very precisely to 125,000 years ago," he added. ... "We are documenting
    for the first time that coastal marine sites are viable places to search for
    early human activity," said Walter. The research, reported in the latest
    edition of the science journal Nature, also suggests possible routes for the
    migration of modern humans out of Africa ...northward, along the coast of
    the Red Sea into the Levant ... [or] ... a southern route along the Red Sea
    close to the Arabian peninsula ... over a land bridge that may have
    connected the two continents. ... Chris Stringer of the Natural History
    Museum in London said the research implied that at least "one dispersal of
    modern humans from Africa must have occurred during the Middle
    Palaeolithic (100,000 years ago) and that characteristic elements of modern
    human behavior existed by then." ... [More support for the "out of Africa"
    theory. The migration of early modern humans to the Levant near is
    perhaps concordant with the brief Biblical statement: "Now the LORD God
    had planted a garden in the east, in Eden; and there he put the man he had
    formed." (Gn 2:8)?]

    http://dailynews.yahoo.com/h/nm/20000503/sc/space_mars_2.html
    Yahoo! ... May 3 ... NASA Mulls Mars Roadmap; Agency Policy
    Questioned ... LAUREL, Md. (Reuters) - Exactly five months after
    the loss of NASA's Mars Polar Lander, U.S. space agency officials
    said on Wednesday they expect a "new architecture" for exploring
    the Red Planet by year's end. U.S. space scientists plan to put up
    an orbital Mars mission in 2001 and participate in the European
    Space Agency's Mars Express project ... officials at NASA
    headquarters are reassessing their goals and the means to achieve
    them. The U.S. space agency has been doing some soul-searching
    regarding Mars and other low-cost, unstaffed missions ... NASA's
    strategic aim in exploring Mars remains the same: follow the water
    in the search for traces of possible life on Mars, the planet that
    most closely resembles Earth. Liquid water is considered a
    prerequisite for life. This aim is unlikely to be achieved with one
    mission that returns samples of the Martian surface to Earth, Cutts
    said. "This is something that will require perhaps decades of
    exploration," ..., along with vehicles that can dig beneath the
    surface. "In the search for life we're unlikely to find what we're after
    on the surface," ... NASA hopes to get a sample back from Mars by
    2010. ... [NASA is still IMHO following a faulty `just-add-water'
    misconception of what life is. If it were that simple, they could
    recreate the necessary conditions in a lab on Earth and watch life
    pop into existence! What needs to be explained is not just the
    chemistry but also the *information*. Not just the hardware but also
    the *software*.]

    http://dailynews.yahoo.com/h/nm/20000426/sc/apeman_safrica_3.html
    Yahoo! ... April 26 ... S.African Apeman Skull Stirs Scientific Excitement
    ...JOHANNESBURG, South Africa (Reuters) - South African scientists
    Wednesday revealed details about a pair of fossils, including the most
    complete ape-man skull ever excavated, which they hope will shed light on
    our distant origins. The pair, christened Orpheus and Eurydice after the
    Greek mythological lovers, are 1.5 to 2.0 million years old and have been
    identified as Paranthropus robustus, a hominid line that became extinct
    about one million years ago. "They are not direct ancestors of modern
    humans but are more like 'kissing cousins' of our ancestors," Lee Berger
    told Reuters after a news conference, where the pair -- discovered in 1994
    but revealed only now -were put on public display for the first time.
    Scientists say the skull belongs to a female of the species while the other
    fossil, a lower jawbone or mandible, belongs to a male. The fossils were
    unearthed seven kilometers (four miles) from the renowned Sterkfontein
    caves north of Johannesburg, which have yielded many hominid finds,
    including the recent discovery of a complete 3.3 million-year-old arm and
    head. ... Scientists say the significance of the find includes the fact that they
    now know what a female Paranthropus robustus looks like and know the
    difference between the male and female of the species. Those differences
    are highlighted by a crest along the top of the male's skull to which the
    muscles of the lower jaw were anchored. The female, apart from being
    smaller, has no such crest -- a distinction found today in male and female
    gorillas.... [If this crest is unique to modern gorillas today, then possibly the
    latter have descended from P. robustus? One of the major problems of
    primatology is the lack of fossil ancestors of modern apes. so maybe
    paleoanthropologists have got *plenty* of fossils of modern apes'
    ancestors, but they are misclassifying them as modern human ancestors?
    There are two biases here which make this possible, if not probable. The
    first is to assume by default that change is positive, i.e. evolution rather
    than devolution. The second is the fame (and even fortune) which comes
    from finding a human ancestor, as opposed to an ape ancestor.]
    =====================================================

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